Sb05g025970 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb05g025970 T256074_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb05g025970.1 MADS box 10 55

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.783
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.717
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.848
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.848
Bo8g104060 Brassica oleracea Bo8g104060 I 0.848
Bra016544 Brassica rapa Bra016544 I 0.848
Bra017404 Brassica rapa Bra017404 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.739
Bra025685 Brassica rapa Bra025685 I 0.826
Bra031049 Brassica rapa Bra031049 I 0.848
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.891
F775_13266 Aegilops tauschii F775_13266 I 0.913
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.783
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.826
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.913
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.826
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.870
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.935
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.826
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.761
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.761
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.783
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.761
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.761
TCM_011687 Theobroma cacao TCM_011687 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.870
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.913
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.913
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.913
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.913
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.792
Ca_16376 Cicer arietinum Ca_16376 I 0.739
Ca_18082 Cicer arietinum Ca_18082 I 0.761
Cla010361 Citrullus lanatus Cla010361 I 0.826
Cla018884 Citrullus lanatus Cla018884 I 0.717
Pm006479 Prunus mume Pm006479 I 0.761
Pm024895 Prunus mume Pm024895 I 0.783
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.812
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.761
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.783
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.826
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.848
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.717
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.804
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.717
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.891
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.717
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.783
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.717
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.761
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.761
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.717
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.804
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.761
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.804
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.870
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.870
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.870
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.761
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.761
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.826
MDP0000146231 Malus domestica MDP0000146231 I 0.783
MDP0000146415 Malus domestica MDP0000146415 I 0.739
MDP0000147667 Malus domestica MDP0000147667 I 0.761
MDP0000193129 Malus domestica MDP0000193129 I 0.783
MDP0000773068 Malus domestica MDP0000773068 I 0.739
MDP0000919323 Malus domestica MDP0000919323 I 0.739
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.804
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.761
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.957
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.957
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.739
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.848
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.848
PK03147.1 Cannabis sativa PK03147.1 I 0.761
PK21701.1 Cannabis sativa PK21701.1 I 0.812
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.826
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.957
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.935
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.717
AGL94 Arabidopsis thaliana AT1G69540 N 0.717
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.870
Bo9g072860 Brassica oleracea Bo9g072860 N 0.761
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.717
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.739
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.783
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.913
OBART11G21780 Oryza barthii OBART11G21780 N 0.891
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.913
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.913
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.870
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.848
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.891
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.891
OS11G0658700 Oryza sativa OS11G0658700 N 0.891
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.739
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.783
Si028357m.g Setaria italica Si028357m.g N 0.891
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.717
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.739
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.783