OPUNC02G23520 (Oryza punctata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OPUNC02G23520 T331657_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.712 0.977
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.678 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.678 0.909
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OPUNC02G23520.1 Sox 162 205

Links

Other Sox family TFs
Other Oryza punctata TFs

529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I
Lus10030450.g Linum usitatissimum Lus10030450.g I
Lus10026613.g Linum usitatissimum Lus10026613.g I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
Carubv10020210m.g Capsella rubella Carubv10020210m.g I
Carubv10017440m.g Capsella rubella Carubv10017440m.g I
Carubv10009419m.g Capsella rubella Carubv10009419m.g I
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I
MDP0000146231 Malus domestica MDP0000146231 I
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I
Cucsa.284960 Cucumis sativus Cucsa.284960 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
29813.m001508 Ricinus communis 29813.m001508 I
Pm024895 Prunus mume Pm024895 I
Pavir.J04162 Panicum virgatum Pavir.J04162 I
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
PK03147.1 Cannabis sativa PK03147.1 I
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
MDP0000919323 Malus domestica MDP0000919323 I
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000193129 Malus domestica MDP0000193129 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000146415 Malus domestica MDP0000146415 I
Bra016544 Brassica rapa Bra016544 I
MTR_4g108720 Medicago truncatula MTR_4g108720 I
Pm006479 Prunus mume Pm006479 I
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I
F775_13266 Aegilops tauschii F775_13266 I
Bra031049 Brassica rapa Bra031049 I
Bra025685 Brassica rapa Bra025685 I
Bra024792 Brassica rapa Bra024792 I
Bra017404 Brassica rapa Bra017404 I
MLOC_11474 Hordeum vulgare MLOC_11474 I
Bra004393 Brassica rapa Bra004393 I
Bo8g104060 Brassica oleracea Bo8g104060 I
Bo8g068060 Brassica oleracea Bo8g068060 I
Bo6g109050 Brassica oleracea Bo6g109050 I
AGL30 Arabidopsis thaliana AT2G03060 I
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I
Sb05g025970 Sorghum bicolor Sb05g025970 I
Cla010361 Citrullus lanatus Cla010361 I
Ca_18082 Cicer arietinum Ca_18082 I
Ca_16376 Cicer arietinum Ca_16376 I
TRIUR3_33223 Triticum urartu TRIUR3_33223 I
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I
TCM_011687 Theobroma cacao TCM_011687 I
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N
GLYMA07G35610 Glycine max GLYMA07G35610 N
GLYMA20G04500 Glycine max GLYMA20G04500 N
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
Bo9g072860 Brassica oleracea Bo9g072860 N
Lus10037166.g Linum usitatissimum Lus10037166.g N
Lus10036761.g Linum usitatissimum Lus10036761.g N
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N