LjT15D16.50.nc (Lotus japonicus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 LjT15D16.50.nc T024446_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT15D16.50.nc B3 59 164

Links

Other B3 family TFs
Other Lotus japonicus TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30032.m000462 Ricinus communis 30032.m000462 N 0.723
30068.m002615 Ricinus communis 30068.m002615 I 0.861
30076.m004471 Ricinus communis 30076.m004471 I 0.960
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.772
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.743
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.891
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.762
ARF31 Arabidopsis thaliana AT2G36080 N 0.713
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.743
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.743
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.851
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.891
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.871
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.792
Bo01079s020 Brassica oleracea Bo01079s020 N 0.713
Bo3g001110 Brassica oleracea Bo3g001110 N 0.832
Bo3g003800 Brassica oleracea Bo3g003800 N 0.703
Bo3g039420 Brassica oleracea Bo3g039420 N 0.871
Bo3g064320 Brassica oleracea Bo3g064320 N 0.723
Bo4g006900 Brassica oleracea Bo4g006900 N 0.842
Bo4g035110 Brassica oleracea Bo4g035110 N 0.703
Bo4g099000 Brassica oleracea Bo4g099000 N 0.812
Bo4g197410 Brassica oleracea Bo4g197410 I 0.851
Bo5g002790 Brassica oleracea Bo5g002790 N 0.851
Bo5g136360 Brassica oleracea Bo5g136360 N 0.713
Bo6g079210 Brassica oleracea Bo6g079210 N 0.822
Bo8g097490 Brassica oleracea Bo8g097490 N 0.832
Bo9g176470 Brassica oleracea Bo9g176470 N 0.743
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.733
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.832
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.743
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.713
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.871
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.851
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.736
Bra000434 Brassica rapa Bra000434 N 0.842
Bra001411 Brassica rapa Bra001411 N 0.723
Bra003482 Brassica rapa Bra003482 N 0.802
Bra004501 Brassica rapa Bra004501 N 0.851
Bra005301 Brassica rapa Bra005301 N 0.703
Bra005886 Brassica rapa Bra005886 N 0.703
Bra007646 Brassica rapa Bra007646 N 0.832
Bra014415 Brassica rapa Bra014415 N 0.822
Bra017262 Brassica rapa Bra017262 N 0.713
Bra030497 Brassica rapa Bra030497 N 0.842
Bra033294 Brassica rapa Bra033294 N 0.832
Bra034828 Brassica rapa Bra034828 N 0.713
Bra040478 Brassica rapa Bra040478 I 0.871
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.802
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.703
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.871
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.861
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.832
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.713
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.723
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.733
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.851
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.743
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.743
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.851
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.723
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.733
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.822
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.861
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.713
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.743
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.941
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.921
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.851
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.713
Ca_00826 Cicer arietinum Ca_00826 N 0.703
Ca_01368 Cicer arietinum Ca_01368 I 0.911
Ca_25633 Cicer arietinum Ca_25633 I 0.713
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.960
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.723
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.901
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.921
Cla005055 Citrullus lanatus Cla005055 N 0.832
Cla006845 Citrullus lanatus Cla006845 I 0.812
Cla014858 Citrullus lanatus Cla014858 N 0.869
Cla017937 Citrullus lanatus Cla017937 I 0.723
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.879
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.851
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.713
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.812
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.891
Eucgr.G02345 Eucalyptus grandis Eucgr.G02345 I 0.700
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.921
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.743
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.941
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.931
F775_04153 Aegilops tauschii F775_04153 N 0.733
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.861
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.861
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.743
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.921
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.723
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.861
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.733
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.931
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.941
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.941
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.941
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.951
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.733
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.911
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.870
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.703
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.921
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.881
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.871
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.743
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.871
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.822
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.832
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.842
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.871
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.723
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.768
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.700
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.782
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.703
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.851
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.717
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.812
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.743
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.723
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.861
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.881
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.861
LPERR07G08550 Leersia perrieri LPERR07G08550 N 0.720
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.762
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.703
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.723
MDP0000128295 Malus domestica MDP0000128295 N 0.830
MDP0000138163 Malus domestica MDP0000138163 N 0.812
MDP0000229742 Malus domestica MDP0000229742 N 0.703
MDP0000288808 Malus domestica MDP0000288808 N 0.812
mgf019085m Mimulus guttatus mgf019085m N 0.743
mgf023686m Mimulus guttatus mgf023686m I 0.752
mgf023769m Mimulus guttatus mgf023769m N 0.881
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.703
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.714
MLOC_47091 Hordeum vulgare MLOC_47091 N 0.703
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.871
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.752
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.703
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.713
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.911
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.941
NGA1 Arabidopsis thaliana AT2G46870 N 0.861
NGA2 Arabidopsis thaliana AT3G61970 N 0.822
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.832
NGA3 Arabidopsis thaliana AT1G01030 N 0.851
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.851
OB02G35380 Oryza brachyantha OB02G35380 I 0.881
OB03G11610 Oryza brachyantha OB03G11610 N 0.901
OB05G32250 Oryza brachyantha OB05G32250 I 0.703
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
OB12G13420 Oryza brachyantha OB12G13420 N 0.723
OBART02G28100 Oryza barthii OBART02G28100 N 0.851
OBART03G01650 Oryza barthii OBART03G01650 N 0.891
OBART04G22880 Oryza barthii OBART04G22880 I 0.871
OBART10G17010 Oryza barthii OBART10G17010 N 0.792
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.851
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.891
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.871
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.792
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.851
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.891
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.792
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.723
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.891
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.871
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.792
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.851
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.851
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.891
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.713
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.792
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.713
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.901
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.921
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.723
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.851
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.891
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.871
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.792
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.851
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.792
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.792
OS02G0683500 Oryza sativa OS02G0683500 N 0.851
OS03G0120900 Oryza sativa OS03G0120900 N 0.891
OS04G0581400 Oryza sativa OS04G0581400 I 0.871
OS10G0537100 Oryza sativa OS10G0537100 N 0.792
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.822
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.772
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.713
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.713
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.871
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.703
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.703
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.871
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.871
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.762
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.842
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.762
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.871
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.881
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.881
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.752
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.921
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.723
PK04952.1 Cannabis sativa PK04952.1 I 0.723
PK11025.1 Cannabis sativa PK11025.1 I 0.911
PK21157.1 Cannabis sativa PK21157.1 I 0.861
Pm024248 Prunus mume Pm024248 I 0.921
Pm028725 Prunus mume Pm028725 N 0.861
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.911
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.911
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.713
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.931
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.911
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.733
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.851
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.921
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.727
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.921
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.911
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.921
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.743
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.713
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.743
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.765
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.891
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.822
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.871
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.743
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.713
Si011823m.g Setaria italica Si011823m.g N 0.881
Si020241m.g Setaria italica Si020241m.g N 0.782
Si027632m.g Setaria italica Si027632m.g N 0.723
Si036864m.g Setaria italica Si036864m.g N 0.881
Si039972m.g Setaria italica Si039972m.g N 0.752
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.881
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.871
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.901
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.752
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.723
TCM_005014 Theobroma cacao TCM_005014 I 0.931
TCM_015590 Theobroma cacao TCM_015590 I 0.911
TCM_022729 Theobroma cacao TCM_022729 N 0.758
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.871
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.832
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.851
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.743
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.713
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.723
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.762
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.703
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.703
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.888
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.861
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.717
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.707
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.929
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.842
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.861
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.812
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.703
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.703
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.871
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.871
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.713
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.762
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.782
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.921
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.752
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.871