Pavir.Ea01473 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ea01473 T050741_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea01473.1.p bHLH 170 215
Pavir.Ea01473.2.p bHLH 170 215

Links

Other bHLH family TFs
Other Panicum virgatum TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000651 Ricinus communis 27810.m000651 N
29908.m006047 Ricinus communis 29908.m006047 N
30055.m001542 Ricinus communis 30055.m001542 N
30061.m000294 Ricinus communis 30061.m000294 N
30169.m006417 Ricinus communis 30169.m006417 N
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N
BGIOSGA031001 Oryza indica BGIOSGA031001 N
Bo4g111000 Brassica oleracea Bo4g111000 N
Bo5g008880 Brassica oleracea Bo5g008880 N
Bo5g015200 Brassica oleracea Bo5g015200 N
Bo5g081360 Brassica oleracea Bo5g081360 N
Bo6g073120 Brassica oleracea Bo6g073120 N
Bo8g092070 Brassica oleracea Bo8g092070 N
Bo8g112550 Brassica oleracea Bo8g112550 N
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N
Bra003295 Brassica rapa Bra003295 N
Bra007346 Brassica rapa Bra007346 N
Bra014612 Brassica rapa Bra014612 N
Bra018638 Brassica rapa Bra018638 N
Bra019822 Brassica rapa Bra019822 N
Bra031621 Brassica rapa Bra031621 N
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N
Carubv10009617m.g Capsella rubella Carubv10009617m.g N
Carubv10012013m.g Capsella rubella Carubv10012013m.g N
Carubv10012266m.g Capsella rubella Carubv10012266m.g N
Carubv10017428m.g Capsella rubella Carubv10017428m.g N
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N
cassava16214.m1 Manihot esculenta cassava16214.m1 N
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N
cassava39829.m1 Manihot esculenta cassava39829.m1 N
cassava41737.m1 Manihot esculenta cassava41737.m1 N
cassava44390.m1 Manihot esculenta cassava44390.m1 N
cassava46219.m1 Manihot esculenta cassava46219.m1 N
cassava5227.m1 Manihot esculenta cassava5227.m1 N
Ca_07051 Cicer arietinum Ca_07051 N
Ca_07269 Cicer arietinum Ca_07269 N
Ca_08435 Cicer arietinum Ca_08435 N
Ca_16482 Cicer arietinum Ca_16482 N
Ca_21713 Cicer arietinum Ca_21713 N
Ca_24699 Cicer arietinum Ca_24699 N
Ca_27078 Cicer arietinum Ca_27078 N
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N
Cla000184 Citrullus lanatus Cla000184 N
Cla002714 Citrullus lanatus Cla002714 N
Cla008187 Citrullus lanatus Cla008187 N
Cla008675 Citrullus lanatus Cla008675 N
Cla015481 Citrullus lanatus Cla015481 N
Cucsa.050260 Cucumis sativus Cucsa.050260 N
Cucsa.065460 Cucumis sativus Cucsa.065460 N
Cucsa.199850 Cucumis sativus Cucsa.199850 N
Cucsa.242970 Cucumis sativus Cucsa.242970 N
Cucsa.248320 Cucumis sativus Cucsa.248320 N
Cucsa.357260 Cucumis sativus Cucsa.357260 N
DOT5 Vitis vinifera VIT_01s0011g03100 N
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N
F775_14972 Aegilops tauschii F775_14972 N
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N
GLYMA01G22120 Glycine max GLYMA01G22120 N
GLYMA02G10970 Glycine max GLYMA02G10970 N
GLYMA02G31270 Glycine max GLYMA02G31270 N
GLYMA08G16390 Glycine max GLYMA08G16390 N
GLYMA10G34770 Glycine max GLYMA10G34770 N
GLYMA11G19060 Glycine max GLYMA11G19060 N
GLYMA12G09400 Glycine max GLYMA12G09400 N
GLYMA12G30930 Glycine max GLYMA12G30930 N
GLYMA12G36660 Glycine max GLYMA12G36660 N
GLYMA13G01720 Glycine max GLYMA13G01720 N
GLYMA13G27371 Glycine max GLYMA13G27371 N
GLYMA13G39370 Glycine max GLYMA13G39370 N
GLYMA14G35140 Glycine max GLYMA14G35140 N
GLYMA15G42870 Glycine max GLYMA15G42870 N
GLYMA19G32430 Glycine max GLYMA19G32430 N
GLYMA20G32750 Glycine max GLYMA20G32750 N
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N
GRMZM2G061545 Zea mays GRMZM2G061545 N
GRMZM2G071101 Zea mays GRMZM2G071101 N
GRMZM2G084014 Zea mays GRMZM2G084014 N
GRMZM2G445684 Zea mays GRMZM2G445684 N
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N
LPERR08G16620 Leersia perrieri LPERR08G16620 N
LPERR09G10700 Leersia perrieri LPERR09G10700 N
Lus10004887.g Linum usitatissimum Lus10004887.g N
Lus10020597.g Linum usitatissimum Lus10020597.g N
Lus10021700.g Linum usitatissimum Lus10021700.g N
Lus10029525.g Linum usitatissimum Lus10029525.g N
Lus10033454.g Linum usitatissimum Lus10033454.g N
Lus10035044.g Linum usitatissimum Lus10035044.g N
Lus10039613.g Linum usitatissimum Lus10039613.g N
MDP0000131949 Malus domestica MDP0000131949 N
MDP0000142494 Malus domestica MDP0000142494 N
MDP0000144266 Malus domestica MDP0000144266 N
MDP0000300013 Malus domestica MDP0000300013 N
MDP0000303483 Malus domestica MDP0000303483 N
MDP0000403797 Malus domestica MDP0000403797 N
MDP0000573922 Malus domestica MDP0000573922 N
MDP0000580545 Malus domestica MDP0000580545 N
MDP0000601705 Malus domestica MDP0000601705 N
mgf019910m Mimulus guttatus mgf019910m N
mgf022319m Mimulus guttatus mgf022319m N
mgf022981m Mimulus guttatus mgf022981m N
MLOC_2787 Hordeum vulgare MLOC_2787 N
MLOC_65351 Hordeum vulgare MLOC_65351 N
MTR_1g093095 Medicago truncatula MTR_1g093095 N
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N
NTT Vitis vinifera VIT_08s0007g08070 N
OB08G26650 Oryza brachyantha OB08G26650 N
OBART06G20890 Oryza barthii OBART06G20890 N
OBART08G19670 Oryza barthii OBART08G19670 N
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N
OMERI08G16450 Oryza meridionalis OMERI08G16450 N
OMERI09G11270 Oryza meridionalis OMERI09G11270 N
ONIVA08G21960 Oryza nivara ONIVA08G21960 N
ONIVA09G15100 Oryza nivara ONIVA09G15100 N
OPUNC08G17810 Oryza punctata OPUNC08G17810 N
OPUNC09G12930 Oryza punctata OPUNC09G12930 N
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N
OS08G0504000 Oryza sativa OS08G0504000 N
OS09G0485600 Oryza sativa OS09G0485600 N
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N
PK03705.1 Cannabis sativa PK03705.1 N
PK05257.1 Cannabis sativa PK05257.1 N
Pm000471 Prunus mume Pm000471 N
Pm001374 Prunus mume Pm001374 N
Pm025853 Prunus mume Pm025853 N
Pm029018 Prunus mume Pm029018 N
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N
Sb02g028220 Sorghum bicolor Sb02g028220 N
Sb07g028010 Sorghum bicolor Sb07g028010 N
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N
Si013819m.g Setaria italica Si013819m.g N
Si029897m.g Setaria italica Si029897m.g N
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N
TCM_005892 Theobroma cacao TCM_005892 N
TCM_011858 Theobroma cacao TCM_011858 N
TCM_024788 Theobroma cacao TCM_024788 N
TCM_034881 Theobroma cacao TCM_034881 N
TCM_040610 Theobroma cacao TCM_040610 N
TCM_041441 Theobroma cacao TCM_041441 N
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N
TRIUR3_23735 Triticum urartu TRIUR3_23735 N
TRIUR3_30490 Triticum urartu TRIUR3_30490 N
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N
TT1 Vitis vinifera VIT_18s0001g05860 N
WIP2 Arabidopsis thaliana AT3G57670 N
WIP3 Arabidopsis thaliana AT1G08290 N
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N
WIP3 Vitis vinifera VIT_06s0080g00270 N
WIP6 Arabidopsis thaliana AT1G13290 N