CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TT1
(
Vitis vinifera
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
VIT_18s0001g05860
T131485_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_18s0001g05860.t01
C2H2 ZF
200
221
FMCRKCGKCLAVKGDWRTHEKN
VIT_18s0001g05860.t01
C2H2 ZF
220
246
KNCGKRWLCACGSDFKHKRSLKDHIKA
Links
Other
C2H2 ZF
family TFs
Other
Vitis vinifera
TFs
217 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27810.m000651
Ricinus communis
27810.m000651
N
0.778
29908.m006047
Ricinus communis
29908.m006047
N
0.821
30055.m001542
Ricinus communis
30055.m001542
N
0.788
30061.m000294
Ricinus communis
30061.m000294
N
0.808
30169.m006417
Ricinus communis
30169.m006417
N
0.768
AMTR_s00022p00243980
Amborella trichopoda
AMTR_s00022p00243980
N
0.778
Aquca_004_00109
Aquilegia coerulea
Aquca_004_00109
N
0.764
Aquca_006_00227
Aquilegia coerulea
Aquca_006_00227
N
0.764
Aquca_040_00077
Aquilegia coerulea
Aquca_040_00077
N
0.764
BGIOSGA030081
Oryza indica
BGIOSGA030081
N
0.764
BGIOSGA031001
Oryza indica
BGIOSGA031001
N
0.774
Bo4g111000
Brassica oleracea
Bo4g111000
N
0.778
Bo5g008880
Brassica oleracea
Bo5g008880
N
0.782
Bo5g081360
Brassica oleracea
Bo5g081360
N
0.778
Bo6g073120
Brassica oleracea
Bo6g073120
N
0.778
Bo8g092070
Brassica oleracea
Bo8g092070
N
0.778
Bo8g112550
Brassica oleracea
Bo8g112550
N
0.782
Bostr.1040s0072
Boechera stricta
Bostr.1040s0072
N
0.791
Bostr.20903s0019
Boechera stricta
Bostr.20903s0019
N
0.778
Bostr.25219s0116
Boechera stricta
Bostr.25219s0116
N
0.773
Bra003295
Brassica rapa
Bra003295
N
0.778
Bra007346
Brassica rapa
Bra007346
N
0.776
Bra014612
Brassica rapa
Bra014612
N
0.778
Bra018638
Brassica rapa
Bra018638
N
0.782
Bra031621
Brassica rapa
Bra031621
N
0.782
BRADI3G39820
Brachypodium distachyon
BRADI3G39820
N
0.774
BRADI4G33557
Brachypodium distachyon
BRADI4G33557
N
0.768
Cagra.0210s0004
Capsella grandiflora
Cagra.0210s0004
N
0.778
Cagra.0764s0003
Capsella grandiflora
Cagra.0764s0003
N
0.791
Cagra.4395s0018
Capsella grandiflora
Cagra.4395s0018
N
0.773
Carubv10009617m.g
Capsella rubella
Carubv10009617m.g
N
0.773
Carubv10012266m.g
Capsella rubella
Carubv10012266m.g
N
0.791
Carubv10017428m.g
Capsella rubella
Carubv10017428m.g
N
0.778
cassava13451.valid.m1
Manihot esculenta
cassava13451.valid.m1
N
0.788
cassava16214.m1
Manihot esculenta
cassava16214.m1
N
0.788
cassava34009.m1
Manihot esculenta
cassava34009.m1
N
0.763
cassava35956.valid.m1
Manihot esculenta
cassava35956.valid.m1
N
0.778
cassava39829.m1
Manihot esculenta
cassava39829.m1
N
0.808
cassava41737.m1
Manihot esculenta
cassava41737.m1
N
0.778
cassava44390.m1
Manihot esculenta
cassava44390.m1
N
0.821
cassava5227.m1
Manihot esculenta
cassava5227.m1
N
0.768
Ca_07051
Cicer arietinum
Ca_07051
N
0.764
Ca_07269
Cicer arietinum
Ca_07269
N
0.778
Ca_16482
Cicer arietinum
Ca_16482
N
0.783
Ca_21713
Cicer arietinum
Ca_21713
N
0.768
Ca_27078
Cicer arietinum
Ca_27078
N
0.797
chr1.CM0318.720.nd
Lotus japonicus
chr1.CM0318.720.nd
N
0.778
chr3.CM1144.10.nc
Lotus japonicus
chr3.CM1144.10.nc
N
0.782
Ciclev10003648m.g
Citrus clementina
Ciclev10003648m.g
N
0.821
Ciclev10005189m.g
Citrus clementina
Ciclev10005189m.g
N
0.778
Ciclev10017716m.g
Citrus clementina
Ciclev10017716m.g
N
0.778
Ciclev10028757m.g
Citrus clementina
Ciclev10028757m.g
N
0.788
Cla000184
Citrullus lanatus
Cla000184
N
0.802
Cla008187
Citrullus lanatus
Cla008187
N
0.778
Cla015481
Citrullus lanatus
Cla015481
N
0.784
Cucsa.050260
Cucumis sativus
Cucsa.050260
N
0.784
Cucsa.065460
Cucumis sativus
Cucsa.065460
N
0.784
Cucsa.199850
Cucumis sativus
Cucsa.199850
N
0.802
Cucsa.242970
Cucumis sativus
Cucsa.242970
N
0.778
Cucsa.357260
Cucumis sativus
Cucsa.357260
N
0.778
Eucgr.A02400
Eucalyptus grandis
Eucgr.A02400
N
0.778
Eucgr.B03870
Eucalyptus grandis
Eucgr.B03870
N
0.788
Eucgr.F00336
Eucalyptus grandis
Eucgr.F00336
N
0.788
Eucgr.J00788
Eucalyptus grandis
Eucgr.J00788
N
0.768
evm.TU.contig_31438
Carica papaya
evm.TU.contig_31438
N
0.774
evm.TU.contig_35924
Carica papaya
evm.TU.contig_35924
N
0.788
evm.TU.supercontig_84.74
Carica papaya
evm.TU.supercontig_84.74
N
0.778
e_gw1.203.23.1
Physcomitrella patens
e_gw1.203.23.1
N
0.768
F775_14972
Aegilops tauschii
F775_14972
N
0.768
gene14361-v1.0-hybrid
Fragaria vesca
gene14361-v1.0-hybrid
N
0.778
gene20598-v1.0-hybrid
Fragaria vesca
gene20598-v1.0-hybrid
N
0.778
gene22042-v1.0-hybrid
Fragaria vesca
gene22042-v1.0-hybrid
N
0.788
GLYMA02G31270
Glycine max
GLYMA02G31270
N
0.778
GLYMA08G16390
Glycine max
GLYMA08G16390
N
0.808
GLYMA11G19060
Glycine max
GLYMA11G19060
N
0.788
GLYMA12G09400
Glycine max
GLYMA12G09400
N
0.788
GLYMA12G30930
Glycine max
GLYMA12G30930
N
0.788
GLYMA12G36660
Glycine max
GLYMA12G36660
N
0.808
GLYMA13G01720
Glycine max
GLYMA13G01720
N
0.797
GLYMA13G27371
Glycine max
GLYMA13G27371
N
0.808
GLYMA13G39370
Glycine max
GLYMA13G39370
N
0.788
GLYMA14G35140
Glycine max
GLYMA14G35140
N
0.797
GLYMA15G42870
Glycine max
GLYMA15G42870
N
0.808
GLYMA19G32430
Glycine max
GLYMA19G32430
N
0.778
Gorai.001G121700
Gossypium raimondii
Gorai.001G121700
N
0.788
Gorai.002G152600
Gossypium raimondii
Gorai.002G152600
N
0.778
Gorai.003G089200
Gossypium raimondii
Gorai.003G089200
N
0.778
Gorai.004G037000
Gossypium raimondii
Gorai.004G037000
N
0.784
Gorai.004G065400
Gossypium raimondii
Gorai.004G065400
N
0.784
Gorai.006G111400
Gossypium raimondii
Gorai.006G111400
N
0.788
Gorai.006G138700
Gossypium raimondii
Gorai.006G138700
N
0.778
Gorai.007G177300
Gossypium raimondii
Gorai.007G177300
N
0.784
Gorai.010G039600
Gossypium raimondii
Gorai.010G039600
N
0.821
Gorai.013G250800
Gossypium raimondii
Gorai.013G250800
N
0.768
GRMZM2G061545
Zea mays
GRMZM2G061545
N
0.774
GRMZM2G071101
Zea mays
GRMZM2G071101
N
0.774
GRMZM2G084014
Zea mays
GRMZM2G084014
N
0.768
GRMZM2G445684
Zea mays
GRMZM2G445684
N
0.774
GSMUA_Achr3G03850_001
Musa acuminata
GSMUA_Achr3G03850_001
N
0.808
GSMUA_Achr3G11050_001
Musa acuminata
GSMUA_Achr3G11050_001
N
0.768
GSMUA_Achr3G11870_001
Musa acuminata
GSMUA_Achr3G11870_001
N
0.768
GSMUA_Achr4G01560_001
Musa acuminata
GSMUA_Achr4G01560_001
N
0.798
GSMUA_Achr8G25650_001
Musa acuminata
GSMUA_Achr8G25650_001
N
0.758
GSMUA_Achr9G12600_001
Musa acuminata
GSMUA_Achr9G12600_001
N
0.808
GSMUA_AchrUn_randomG20320_001
Musa acuminata
GSMUA_AchrUn_randomG20320_001
N
0.778
GSMUA_AchrUn_randomG22660_001
Musa acuminata
GSMUA_AchrUn_randomG22660_001
N
0.778
gw1.359.34.1
Physcomitrella patens
gw1.359.34.1
N
0.768
LjSGA_032817.1
Lotus japonicus
LjSGA_032817.1
N
0.797
LPERR08G16620
Leersia perrieri
LPERR08G16620
N
0.774
LPERR09G10700
Leersia perrieri
LPERR09G10700
N
0.774
Lus10004887.g
Linum usitatissimum
Lus10004887.g
N
0.764
Lus10020597.g
Linum usitatissimum
Lus10020597.g
N
0.764
Lus10029525.g
Linum usitatissimum
Lus10029525.g
N
0.798
Lus10031271.g
Linum usitatissimum
Lus10031271.g
N
0.759
Lus10031838.g
Linum usitatissimum
Lus10031838.g
N
0.759
Lus10033454.g
Linum usitatissimum
Lus10033454.g
N
0.797
Lus10039613.g
Linum usitatissimum
Lus10039613.g
N
0.798
MDP0000131949
Malus domestica
MDP0000131949
N
0.788
MDP0000142494
Malus domestica
MDP0000142494
N
0.795
MDP0000144266
Malus domestica
MDP0000144266
N
0.797
MDP0000300013
Malus domestica
MDP0000300013
N
0.788
MDP0000403797
Malus domestica
MDP0000403797
N
0.778
MDP0000573922
Malus domestica
MDP0000573922
N
0.818
MDP0000580545
Malus domestica
MDP0000580545
N
0.778
MDP0000601705
Malus domestica
MDP0000601705
N
0.778
mgf022319m
Mimulus guttatus
mgf022319m
N
0.784
mgf022981m
Mimulus guttatus
mgf022981m
N
0.778
MLOC_2787
Hordeum vulgare
MLOC_2787
N
0.768
MLOC_65351
Hordeum vulgare
MLOC_65351
N
0.774
NTT
Arabidopsis lyrata
fgenesh2_kg.5__2209__AT3G57670.1
N
0.778
NTT
Vitis vinifera
VIT_08s0007g08070
N
0.778
OB08G26650
Oryza brachyantha
OB08G26650
N
0.774
OBART06G20890
Oryza barthii
OBART06G20890
N
0.774
OBART08G19670
Oryza barthii
OBART08G19670
N
0.774
OBART09G03640
Oryza barthii
OBART09G03640
N
0.764
OGLUM08G20830
Oryza glumaepatula
OGLUM08G20830
N
0.774
OGLUM09G04400
Oryza glumaepatula
OGLUM09G04400
N
0.764
OGLUM09G15150
Oryza glumaepatula
OGLUM09G15150
N
0.774
OMERI08G16450
Oryza meridionalis
OMERI08G16450
N
0.774
OMERI09G02890
Oryza meridionalis
OMERI09G02890
N
0.764
OMERI09G11270
Oryza meridionalis
OMERI09G11270
N
0.774
ONIVA02G14580
Oryza nivara
ONIVA02G14580
N
0.764
ONIVA08G21960
Oryza nivara
ONIVA08G21960
N
0.774
ONIVA09G15100
Oryza nivara
ONIVA09G15100
N
0.774
OPUNC08G17810
Oryza punctata
OPUNC08G17810
N
0.774
OPUNC09G03280
Oryza punctata
OPUNC09G03280
N
0.764
OPUNC09G12930
Oryza punctata
OPUNC09G12930
N
0.774
orange1.1g019587m.g
Citrus sinensis
orange1.1g019587m.g
N
0.778
orange1.1g037179m.g
Citrus sinensis
orange1.1g037179m.g
N
0.821
orange1.1g037234m.g
Citrus sinensis
orange1.1g037234m.g
N
0.779
orange1.1g039549m.g
Citrus sinensis
orange1.1g039549m.g
N
0.788
orange1.1g040794m.g
Citrus sinensis
orange1.1g040794m.g
N
0.778
ORGLA08G0173000
Oryza glaberrima
ORGLA08G0173000
N
0.774
ORGLA09G0111700
Oryza glaberrima
ORGLA09G0111700
N
0.774
ORGLA09G0176200
Oryza glaberrima
ORGLA09G0176200
N
0.764
ORUFI09G04060
Oryza rufipogon
ORUFI09G04060
N
0.764
ORUFI09G15680
Oryza rufipogon
ORUFI09G15680
N
0.774
OS08G0504000
Oryza sativa
OS08G0504000
N
0.774
OS09G0485600
Oryza sativa
OS09G0485600
N
0.774
Pavir.Ba01731
Panicum virgatum
Pavir.Ba01731
N
0.768
Pavir.Fa00506
Panicum virgatum
Pavir.Fa00506
N
0.774
Pavir.Fb01879
Panicum virgatum
Pavir.Fb01879
N
0.774
PGSC0003DMG400006808
Solanum tuberosum
PGSC0003DMG400006808
N
0.798
PGSC0003DMG400007112
Solanum tuberosum
PGSC0003DMG400007112
N
0.764
PGSC0003DMG400013609
Solanum tuberosum
PGSC0003DMG400013609
N
0.778
PGSC0003DMG400030271
Solanum tuberosum
PGSC0003DMG400030271
N
0.778
PGSC0003DMG400030803
Solanum tuberosum
PGSC0003DMG400030803
N
0.778
PK03705.1
Cannabis sativa
PK03705.1
N
0.778
PK05257.1
Cannabis sativa
PK05257.1
N
0.758
Pm000471
Prunus mume
Pm000471
N
0.778
Pm001374
Prunus mume
Pm001374
N
0.788
Pm025853
Prunus mume
Pm025853
N
0.778
POPTR_0001s27490
Populus trichocarpa
POPTR_0001s27490
N
0.808
POPTR_0002s09840
Populus trichocarpa
POPTR_0002s09840
N
0.811
POPTR_0003s20400
Populus trichocarpa
POPTR_0003s20400
N
0.768
POPTR_0004s19460
Populus trichocarpa
POPTR_0004s19460
N
0.788
POPTR_0009s06700
Populus trichocarpa
POPTR_0009s06700
N
0.808
POPTR_0009s14590
Populus trichocarpa
POPTR_0009s14590
N
0.788
POPTR_0016s05310
Populus trichocarpa
POPTR_0016s05310
N
0.778
PRUPE_ppa008185mg
Prunus persica
PRUPE_ppa008185mg
N
0.778
PRUPE_ppa023619mg
Prunus persica
PRUPE_ppa023619mg
N
0.788
PRUPE_ppa024429mg
Prunus persica
PRUPE_ppa024429mg
N
0.778
SapurV1A.0009s0540
Salix purpurea
SapurV1A.0009s0540
N
0.768
SapurV1A.0018s0090
Salix purpurea
SapurV1A.0018s0090
N
0.778
SapurV1A.0027s0280
Salix purpurea
SapurV1A.0027s0280
N
0.788
SapurV1A.0080s0360
Salix purpurea
SapurV1A.0080s0360
N
0.788
SapurV1A.0219s0040
Salix purpurea
SapurV1A.0219s0040
N
0.764
SapurV1A.0445s0120
Salix purpurea
SapurV1A.0445s0120
N
0.773
SapurV1A.0445s0140
Salix purpurea
SapurV1A.0445s0140
N
0.773
Sb02g028220
Sorghum bicolor
Sb02g028220
N
0.768
Sb07g028010
Sorghum bicolor
Sb07g028010
N
0.774
SELMODRAFT_110681
Selaginella moellendorffii
SELMODRAFT_110681
N
0.768
SELMODRAFT_128378
Selaginella moellendorffii
SELMODRAFT_128378
N
0.768
Si013819m.g
Setaria italica
Si013819m.g
N
0.774
Si029897m.g
Setaria italica
Si029897m.g
N
0.768
Solyc01g087050.2
Solanum lycopersicum
Solyc01g087050.2
N
0.798
Solyc04g074320.1
Solanum lycopersicum
Solyc04g074320.1
N
0.778
Solyc11g062060.1
Solanum lycopersicum
Solyc11g062060.1
N
0.778
TCM_005892
Theobroma cacao
TCM_005892
N
0.808
TCM_024788
Theobroma cacao
TCM_024788
N
0.778
TCM_034881
Theobroma cacao
TCM_034881
N
0.821
TCM_040610
Theobroma cacao
TCM_040610
N
0.768
TCM_041441
Theobroma cacao
TCM_041441
N
0.788
Thhalv10006035m.g
Eutrema salsugineum
Thhalv10006035m.g
N
0.778
Thhalv10008125m.g
Eutrema salsugineum
Thhalv10008125m.g
N
0.773
Traes_5BL_6888AE9CB
Triticum aestivum
Traes_5BL_6888AE9CB
N
0.768
Traes_5DL_51643AC9F
Triticum aestivum
Traes_5DL_51643AC9F
N
0.768
Traes_7AL_1070DBD71
Triticum aestivum
Traes_7AL_1070DBD71
N
0.774
Traes_7AS_8054DC45D
Triticum aestivum
Traes_7AS_8054DC45D
N
0.768
TRIUR3_23735
Triticum urartu
TRIUR3_23735
N
0.774
TRIUR3_30490
Triticum urartu
TRIUR3_30490
N
0.768
TT1
Arabidopsis lyrata
fgenesh2_kg.1__3606__AT1G34790.1
N
0.791
VIT_06s0004g01870
Vitis vinifera
VIT_06s0004g01870
N
0.760
WIP2
Arabidopsis thaliana
AT3G57670
N
0.778
WIP3
Arabidopsis thaliana
AT1G08290
N
0.773
WIP3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000684
N
0.773
WIP3
Vitis vinifera
VIT_06s0080g00270
N
0.788