TCM_016416 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_016416 T332828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.519 0.712
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.519 0.712
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY24967 Sox 179 247
EOY24967 Sox 295 361
EOY24967 Sox 420 488
EOY24968 Sox 179 247
EOY24968 Sox 295 352

Links

Other Sox family TFs
Other Theobroma cacao TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.623
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.497
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.478
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.416
Bo1g037180 Brassica oleracea Bo1g037180 I 0.517
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.505
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.534
Bra013731 Brassica rapa Bra013731 I 0.517
Bra035256 Brassica rapa Bra035256 I 0.468
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.507
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.531
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.515
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.524
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.506
cassava45417.m1 Manihot esculenta cassava45417.m1 N 0.593
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.535
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.531
Cla011101 Citrullus lanatus Cla011101 I 0.642
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.582
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.608
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.592
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.507
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.585
GLYMA01G07470 Glycine max GLYMA01G07470 N 0.437
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.549
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.527
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.639
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.496
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.480
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.548
HMGB13 Arabidopsis thaliana AT4G11080 D 0.519
HMGB6 Arabidopsis thaliana AT4G23800 I 0.542
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.419
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.556
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.568
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.564
MDP0000268093 Malus domestica MDP0000268093 I 0.471
mgf015439m Mimulus guttatus mgf015439m I 0.534
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.428
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.466
OB02G19930 Oryza brachyantha OB02G19930 N 0.430
OBART02G11160 Oryza barthii OBART02G11160 I 0.416
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.416
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.437
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.416
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.418
orange1.1g017939m.g Citrus sinensis orange1.1g017939m.g N 0.450
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.416
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.471
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.505
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.454
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.581
PK10992.1 Cannabis sativa PK10992.1 I 0.513
Pm024077 Prunus mume Pm024077 I 0.567
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.587
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.624
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.567
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.617
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.486
Si017040m.g Setaria italica Si017040m.g I 0.458
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.583
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.530
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.507
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.440
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.594