chr5.CM0040.670.nd (Lotus japonicus)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 chr5.CM0040.670.nd T357130_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.871 0.814
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.871 0.814
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.871 0.814
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.871 0.814
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.870 0.780
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.867 0.814
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.867 0.814
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.867 0.814
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.867 0.814
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.867 0.814
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0040.670.nd WRKY 157 215

Links

Other WRKY family TFs
Other Lotus japonicus TFs

408 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I
AGL30 Arabidopsis thaliana AT2G03060 I
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N
AGL94 Arabidopsis thaliana AT1G69540 N
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I
Bo6g109050 Brassica oleracea Bo6g109050 I
Bo7g080890 Brassica oleracea Bo7g080890 I
Bo8g068060 Brassica oleracea Bo8g068060 I
Bo8g104060 Brassica oleracea Bo8g104060 I
Bo9g072860 Brassica oleracea Bo9g072860 N
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I
Bra004393 Brassica rapa Bra004393 I
Bra016544 Brassica rapa Bra016544 I
Bra017404 Brassica rapa Bra017404 I
Bra024792 Brassica rapa Bra024792 I
Bra025685 Brassica rapa Bra025685 I
Bra031049 Brassica rapa Bra031049 I
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I
Carubv10009419m.g Capsella rubella Carubv10009419m.g I
Carubv10017440m.g Capsella rubella Carubv10017440m.g I
Carubv10020210m.g Capsella rubella Carubv10020210m.g I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
cassava46162.m1 Manihot esculenta cassava46162.m1 I
Ca_18082 Cicer arietinum Ca_18082 I
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
Cla010361 Citrullus lanatus Cla010361 I
Cla018884 Citrullus lanatus Cla018884 I
Cucsa.112840 Cucumis sativus Cucsa.112840 I
Cucsa.284960 Cucumis sativus Cucsa.284960 I
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N
F775_13266 Aegilops tauschii F775_13266 I
GLYMA02G12131 Glycine max GLYMA02G12131 N
GLYMA07G35610 Glycine max GLYMA07G35610 N
GLYMA17G10941 Glycine max GLYMA17G10941 I
GLYMA20G04500 Glycine max GLYMA20G04500 N
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
Lus10026613.g Linum usitatissimum Lus10026613.g I
Lus10030450.g Linum usitatissimum Lus10030450.g I
Lus10034464.g Linum usitatissimum Lus10034464.g I
Lus10036761.g Linum usitatissimum Lus10036761.g N
Lus10037166.g Linum usitatissimum Lus10037166.g N
MDP0000146231 Malus domestica MDP0000146231 I
MDP0000146415 Malus domestica MDP0000146415 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000919323 Malus domestica MDP0000919323 I
MLOC_11474 Hordeum vulgare MLOC_11474 I
MTR_4g108720 Medicago truncatula MTR_4g108720 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N
OLONG_008007 Oryza longistaminata OLONG_008007 N
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I
Pavir.J04162 Panicum virgatum Pavir.J04162 I
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I
PK03147.1 Cannabis sativa PK03147.1 I
Pm006479 Prunus mume Pm006479 I
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
Sb05g025970 Sorghum bicolor Sb05g025970 I
TCM_011687 Theobroma cacao TCM_011687 I
TCM_014051 Theobroma cacao TCM_014051 I
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I
TRIUR3_33223 Triticum urartu TRIUR3_33223 I