DREB2C (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_402826.1 T005099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2C
M00846_2.00 		Arabidopsis thaliana
NNRCCGNNN
NNNCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DREB2C 		0.726 0.959
DREB2C
M01049_2.00 		Arabidopsis thaliana
VRCCGVCW
WGBCGGYB		 PBM
Sullivan et al.(2014)
pTH9747 		0.726 0.959
DREB2C
M06611_2.00 		Arabidopsis thaliana
DCCDCCRCCDHYDCCRCCDCM
KGHGGYGGHRDHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
ERF48_col_a 		0.726 0.959
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.704 0.796
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.680 0.796
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.680 0.796
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.680 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_402826.1 AP2 81 132

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.680
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.704
DREB2D Arabidopsis thaliana AT1G75490 D 0.680
DREB2C Arabidopsis thaliana AT2G40340 D 0.726
AT2G40350 Arabidopsis thaliana AT2G40350 I 0.775
DREB2G Arabidopsis thaliana AT5G18450 D 0.704
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.746
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.704
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.680
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.685
Bo2g016490 Brassica oleracea Bo2g016490 I 0.684
Bo2g083920 Brassica oleracea Bo2g083920 I 0.681
Bo4g190040 Brassica oleracea Bo4g190040 I 0.731
Bo6g086320 Brassica oleracea Bo6g086320 I 0.680
Bo6g119660 Brassica oleracea Bo6g119660 I 0.680
Bo9g155940 Brassica oleracea Bo9g155940 I 0.704
Bra002159 Brassica rapa Bra002159 I 0.704
Bra003752 Brassica rapa Bra003752 I 0.680
Bra008200 Brassica rapa Bra008200 I 0.681
Bra015840 Brassica rapa Bra015840 I 0.680
Bra017011 Brassica rapa Bra017011 I 0.731
Bra023674 Brassica rapa Bra023674 I 0.684
PK07402.1 Cannabis sativa PK07402.1 D 0.700
PK07829.1 Cannabis sativa PK07829.1 I 0.691
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.699
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.680
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.699
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.680
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.716
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.699
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.685
Ca_10770 Cicer arietinum Ca_10770 I 0.687
Ca_12446 Cicer arietinum Ca_12446 I 0.682
Cla006713 Citrullus lanatus Cla006713 I 0.697
Cla012194 Citrullus lanatus Cla012194 I 0.681
Cla021113 Citrullus lanatus Cla021113 I 0.685
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.683
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.716
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.716
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.683
Cucsa.130200 Cucumis sativus Cucsa.130200 I 0.679
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.703
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.687
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.686
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.707
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.704
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.755
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.680
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.696
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.683
GLYMA02G42960 Glycine max GLYMA02G42960 I 0.697
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.687
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.687
GLYMA14G06080 Glycine max GLYMA14G06080 I 0.697
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.677
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.677
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.684
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.690
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.684
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.678
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.686
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.686
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.687
MDP0000147009 Malus domestica MDP0000147009 I 0.683
MDP0000153866 Malus domestica MDP0000153866 I 0.692
MDP0000165880 Malus domestica MDP0000165880 I 0.684
MDP0000250924 Malus domestica MDP0000250924 I 0.697
MDP0000250927 Malus domestica MDP0000250927 I 0.692
MDP0000446783 Malus domestica MDP0000446783 I 0.683
MDP0000880312 Malus domestica MDP0000880312 I 0.679
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.718
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.683
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.682
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.687
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.681
mgf017629m Mimulus guttatus mgf017629m I 0.699
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.688
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.712
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.691
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.701
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.693
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.679
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.677
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.710
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.695
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.681
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.679
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.684
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.709
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.718
Pm003634 Prunus mume Pm003634 I 0.708
Pm006274 Prunus mume Pm006274 I 0.687
Pm018989 Prunus mume Pm018989 I 0.683
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.683
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.679
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.706
29729.m002292 Ricinus communis 29729.m002292 I 0.726
30170.m014115 Ricinus communis 30170.m014115 I 0.683
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.678
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.683
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.703
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.700
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.703
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.700
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.688
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.688
Si002067m.g Setaria italica Si002067m.g I 0.680
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.690
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.699
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.699
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.690
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.694
TCM_034132 Theobroma cacao TCM_034132 I 0.678
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.701
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.693
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.694
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.704