Carubv10009617m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10009617m.g T142712_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009617m C2H2 ZF 274 295
Carubv10009617m C2H2 ZF 294 320

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32978 Aegilops tauschii F775_32978 I
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I
ARF16 Arabidopsis lyrata scaffold_701217.1 I
ARF10 Arabidopsis thaliana AT2G28350 I
ARF16 Arabidopsis thaliana AT4G30080 D
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I
Bo1g014600 Brassica oleracea Bo1g014600 I
Bo4g071620 Brassica oleracea Bo4g071620 I
Bo7g114200 Brassica oleracea Bo7g114200 I
Bra011162 Brassica rapa Bra011162 I
Bra011955 Brassica rapa Bra011955 I
Bra024109 Brassica rapa Bra024109 I
PK13064.1 Cannabis sativa PK13064.1 I
PK13393.1 Cannabis sativa PK13393.1 I
PK17007.1 Cannabis sativa PK17007.1 I
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I
Carubv10004220m.g Capsella rubella Carubv10004220m.g I
Carubv10019991m.g Capsella rubella Carubv10019991m.g N
Carubv10022755m.g Capsella rubella Carubv10022755m.g I
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I
Ca_02541 Cicer arietinum Ca_02541 I
Ca_08488 Cicer arietinum Ca_08488 I
Ca_17136 Cicer arietinum Ca_17136 I
Ca_17624 Cicer arietinum Ca_17624 I
Ca_26121 Cicer arietinum Ca_26121 I
Cla008883 Citrullus lanatus Cla008883 I
Cla013979 Citrullus lanatus Cla013979 I
Cla018574 Citrullus lanatus Cla018574 I
Cla022413 Citrullus lanatus Cla022413 I
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I
Cucsa.124410 Cucumis sativus Cucsa.124410 I
Cucsa.137650 Cucumis sativus Cucsa.137650 I
Cucsa.381330 Cucumis sativus Cucsa.381330 I
Cucsa.386060 Cucumis sativus Cucsa.386060 I
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I
GLYMA10G06080 Glycine max GLYMA10G06080 I
GLYMA10G35481 Glycine max GLYMA10G35481 I
GLYMA11G20490 Glycine max GLYMA11G20490 I
GLYMA12G08110 Glycine max GLYMA12G08110 I
GLYMA12G29720 Glycine max GLYMA12G29720 I
GLYMA13G20382 Glycine max GLYMA13G20382 I
GLYMA13G40030 Glycine max GLYMA13G40030 I
GLYMA19G36571 Glycine max GLYMA19G36571 I
GLYMA20G32040 Glycine max GLYMA20G32040 I
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I
MLOC_64795 Hordeum vulgare MLOC_64795 I
MLOC_77438 Hordeum vulgare MLOC_77438 I
LPERR02G20290 Leersia perrieri LPERR02G20290 I
LPERR04G15300 Leersia perrieri LPERR04G15300 I
LPERR04G26090 Leersia perrieri LPERR04G26090 N
LPERR06G21020 Leersia perrieri LPERR06G21020 I
LPERR10G09970 Leersia perrieri LPERR10G09970 I
Lus10009770.g Linum usitatissimum Lus10009770.g N
Lus10016091.g Linum usitatissimum Lus10016091.g I
Lus10019940.g Linum usitatissimum Lus10019940.g I
Lus10021467.g Linum usitatissimum Lus10021467.g I
Lus10023519.g Linum usitatissimum Lus10023519.g I
Lus10024753.g Linum usitatissimum Lus10024753.g N
Lus10024754.g Linum usitatissimum Lus10024754.g N
Lus10026510.g Linum usitatissimum Lus10026510.g I
Lus10040403.g Linum usitatissimum Lus10040403.g I
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I
MDP0000131481 Malus domestica MDP0000131481 I
MDP0000221322 Malus domestica MDP0000221322 I
MDP0000256621 Malus domestica MDP0000256621 I
MDP0000750392 Malus domestica MDP0000750392 I
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I
MTR_1g064430 Medicago truncatula MTR_1g064430 I
MTR_1g094960 Medicago truncatula MTR_1g094960 I
MTR_2g094570 Medicago truncatula MTR_2g094570 I
MTR_3g073420 Medicago truncatula MTR_3g073420 N
MTR_4g058930 Medicago truncatula MTR_4g058930 I
MTR_7g101275 Medicago truncatula MTR_7g101275 I
MTR_7g101280 Medicago truncatula MTR_7g101280 I
mgf000336m Mimulus guttatus mgf000336m I
mgf005300m Mimulus guttatus mgf005300m I
mgf016139m Mimulus guttatus mgf016139m I
mgf024607m Mimulus guttatus mgf024607m I
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I
OBART04G18910 Oryza barthii OBART04G18910 I
OBART06G25230 Oryza barthii OBART06G25230 I
OBART10G13410 Oryza barthii OBART10G13410 I
OB02G32150 Oryza brachyantha OB02G32150 I
OB04G25990 Oryza brachyantha OB04G25990 I
OB06G32920 Oryza brachyantha OB06G32920 I
OB10G20590 Oryza brachyantha OB10G20590 I
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I
BGIOSGA008657 Oryza indica BGIOSGA008657 I
ARF10 Oryza indica BGIOSGA016767 I
BGIOSGA033142 Oryza indica BGIOSGA033142 I
OLONG_000617 Oryza longistaminata OLONG_000617 I
OLONG_021130 Oryza longistaminata OLONG_021130 I
OMERI02G24320 Oryza meridionalis OMERI02G24320 I
OMERI04G15770 Oryza meridionalis OMERI04G15770 I
OMERI06G25370 Oryza meridionalis OMERI06G25370 I
OMERI10G10210 Oryza meridionalis OMERI10G10210 I
ONIVA02G27180 Oryza nivara ONIVA02G27180 I
ONIVA04G29840 Oryza nivara ONIVA04G29840 N
ONIVA06G28270 Oryza nivara ONIVA06G28270 I
ONIVA06G31350 Oryza nivara ONIVA06G31350 I
ONIVA10G14700 Oryza nivara ONIVA10G14700 I
OPUNC02G22610 Oryza punctata OPUNC02G22610 I
OPUNC04G16630 Oryza punctata OPUNC04G16630 I
OPUNC06G22960 Oryza punctata OPUNC06G22960 I
OPUNC10G11840 Oryza punctata OPUNC10G11840 I
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I
ARF8 Oryza sativa OS02G0628600 I
OS04G0519700 Oryza sativa OS04G0519700 I
ARF18 Oryza sativa OS06G0685700 I
ARF22 Oryza sativa OS10G0479900 I
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I
Pavir.J03524 Panicum virgatum Pavir.J03524 I
Pavir.J24081 Panicum virgatum Pavir.J24081 I
Pavir.J26437 Panicum virgatum Pavir.J26437 I
Pavir.J37640 Panicum virgatum Pavir.J37640 I
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I
Pm018533 Prunus mume Pm018533 I
Pm019126 Prunus mume Pm019126 I
Pm030120 Prunus mume Pm030120 I
Pm031275 Prunus mume Pm031275 I
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I
27494.m000045 Ricinus communis 27494.m000045 I
27538.m000327 Ricinus communis 27538.m000327 I
29908.m005953 Ricinus communis 29908.m005953 I
30078.m002329 Ricinus communis 30078.m002329 I
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I
Si005991m.g Setaria italica Si005991m.g I
Si009541m.g Setaria italica Si009541m.g I
Si016509m.g Setaria italica Si016509m.g I
Si034525m.g Setaria italica Si034525m.g I
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I
Sb01g019130 Sorghum bicolor Sb01g019130 I
Sb04g026610 Sorghum bicolor Sb04g026610 I
Sb10g027790 Sorghum bicolor Sb10g027790 I
TCM_022163 Theobroma cacao TCM_022163 I
TCM_029792 Theobroma cacao TCM_029792 I
TCM_035002 Theobroma cacao TCM_035002 I
TCM_042067 Theobroma cacao TCM_042067 I
TCM_043157 Theobroma cacao TCM_043157 I
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I
ARF10 Vitis vinifera VIT_06s0004g02750 I
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I
ARF16 Vitis vinifera VIT_13s0019g04380 I
AC207656.3_FG002 Zea mays AC207656.3_FG002 I
GRMZM2G081406 Zea mays GRMZM2G081406 I
GRMZM2G153233 Zea mays GRMZM2G153233 I
GRMZM2G159399 Zea mays GRMZM2G159399 I
GRMZM2G390641 Zea mays GRMZM2G390641 I