POPTR_0013s00350 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0013s00350 T255863_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s00350.1 MADS box 10 58

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.854
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.875
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.812
Bo2g104810 Brassica oleracea Bo2g104810 I 0.812
Bo5g145010 Brassica oleracea Bo5g145010 N 0.000
Bra018490 Brassica rapa Bra018490 I 0.833
Bra029469 Brassica rapa Bra029469 I 0.812
Bra039404 Brassica rapa Bra039404 N 0.000
Cagra.1772s0002 Capsella grandiflora Cagra.1772s0002 N 0.708
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.812
Carubv10015167m.g Capsella rubella Carubv10015167m.g N 0.708
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.812
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.771
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.841
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.917
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.917
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.771
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.812
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.854
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.854
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.771
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.875
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.917
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.938
mgf026186m Mimulus guttatus mgf026186m I 0.795
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.917
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.896
Pm003257 Prunus mume Pm003257 I 0.787
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.787
30128.m008984 Ricinus communis 30128.m008984 I 0.854
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.875
TCM_026845 Theobroma cacao TCM_026845 I 0.771
TCM_026842 Theobroma cacao TCM_026842 I 0.854
TCM_025671 Theobroma cacao TCM_025671 I 0.771
TCM_025670 Theobroma cacao TCM_025670 I 0.812
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.958