VIT_02s0025g01220 (Vitis vinifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VIT_02s0025g01220 T333231_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.476 0.683
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.476 0.683
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_02s0025g01220.t01 Sox 180 245
VIT_02s0025g01220.t01 Sox 296 362
VIT_02s0025g01220.t01 Sox 425 493

Links

Other Sox family TFs
Other Vitis vinifera TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.509
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.481
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.504
HMGB13 Arabidopsis thaliana AT4G11080 D 0.476
HMGB6 Arabidopsis thaliana AT4G23800 I 0.496
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.498
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.454
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.524
Bo1g037180 Brassica oleracea Bo1g037180 I 0.480
Bra013731 Brassica rapa Bra013731 I 0.480
Bra035256 Brassica rapa Bra035256 I 0.433
PK10992.1 Cannabis sativa PK10992.1 I 0.515
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.493
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.456
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.464
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.468
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.524
Ca_05811 Cicer arietinum Ca_05811 I 0.428
Cla011101 Citrullus lanatus Cla011101 I 0.616
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.536
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.540
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.562
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.440
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.502
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.517
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.538
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.519
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.601
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.446
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.464
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.554
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.546
Lus10033951.g Linum usitatissimum Lus10033951.g N 0.448
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.513
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.523
MDP0000268093 Malus domestica MDP0000268093 I 0.498
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.499
mgf015439m Mimulus guttatus mgf015439m I 0.531
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.482
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.530
OBART02G11160 Oryza barthii OBART02G11160 I 0.434
OB02G19930 Oryza brachyantha OB02G19930 N 0.518
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.434
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.434
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.421
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.455
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.434
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.440
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.434
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.554
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.520
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.511
estExt_Genewise1.C_610004 Physcomitrella patens estExt_Genewise1.C_610004 N 0.423
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.550
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.568
Pm024077 Prunus mume Pm024077 I 0.555
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.555
30190.m010807 Ricinus communis 30190.m010807 I 0.584
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.558
Si017040m.g Setaria italica Si017040m.g I 0.507
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.556
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.554
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.534
TCM_016416 Theobroma cacao TCM_016416 I 0.594
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.450
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.508