POPTR_0014s10940 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0014s10940 T027372_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s10940.1 BED ZF 11 57
POPTR_0014s10940.1 BED ZF 135 182

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 1.000
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N 0.988
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 0.988
TCM_004927 Theobroma cacao TCM_004927 N 0.976
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.976
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.964
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.964
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.952
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N 0.940
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.940
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.904
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 0.880
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N 0.880
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 0.880
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 0.880
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.880
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.878
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.869
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.869
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.867
29889.m003394 Ricinus communis 29889.m003394 N 0.855
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.855
PK21594.1 Cannabis sativa PK21594.1 N 0.845
MDP0000314867 Malus domestica MDP0000314867 N 0.845
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.845
Pm008491 Prunus mume Pm008491 N 0.845
MDP0000133479 Malus domestica MDP0000133479 N 0.845
TCM_021492 Theobroma cacao TCM_021492 N 0.843
Bo00763s120 Brassica oleracea Bo00763s120 N 0.840
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.833
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N 0.821