29889.m003394 (Ricinus communis)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 29889.m003394 T028053_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29889.m003394 BED ZF 11 58
29889.m003394 BED ZF 132 178

Links

Other BED ZF family TFs
Other Ricinus communis TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 0.964
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 0.964
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N 0.964
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 0.964
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.952
TCM_021492 Theobroma cacao TCM_021492 N 0.940
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.940
Bo00763s120 Brassica oleracea Bo00763s120 N 0.938
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.928
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.916
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.904
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.904
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.893
MDP0000133479 Malus domestica MDP0000133479 N 0.881
MDP0000314867 Malus domestica MDP0000314867 N 0.881
PK21594.1 Cannabis sativa PK21594.1 N 0.880
Pm008491 Prunus mume Pm008491 N 0.880
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.880
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.867
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.867
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N 0.857
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N 0.855
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 0.855
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.855
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N 0.855
TCM_004927 Theobroma cacao TCM_004927 N 0.855
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 0.845
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.845
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N 0.845
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.831
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.821