GLYMA08G02550 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA08G02550 T330278_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA08G02550.1 Sox 151 219
GLYMA08G02550.1 Sox 267 333
GLYMA08G02550.1 Sox 396 464

Links

Other Sox family TFs
Other Glycine max TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.699
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.589
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.550
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.531
30190.m010807 Ricinus communis 30190.m010807 I 0.527
TCM_016416 Theobroma cacao TCM_016416 I 0.527
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.519
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.517
Cla011101 Citrullus lanatus Cla011101 I 0.515
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.511
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.504
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.499
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.494
Pm024077 Prunus mume Pm024077 I 0.494
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.489
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.483
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.481
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.480
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.478
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.464
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.454
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.451
OB02G19930 Oryza brachyantha OB02G19930 N 0.450
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.450
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.450
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.449
PK10992.1 Cannabis sativa PK10992.1 I 0.446
GLYMA01G07470 Glycine max GLYMA01G07470 N 0.445
Bra013731 Brassica rapa Bra013731 I 0.445
Bo1g037180 Brassica oleracea Bo1g037180 I 0.445
Ca_05811 Cicer arietinum Ca_05811 I 0.444
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.437
HMGB6 Arabidopsis thaliana AT4G23800 I 0.437
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.435
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.433
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.433
mgf015439m Mimulus guttatus mgf015439m I 0.431
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.428
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.425
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.424
MDP0000268093 Malus domestica MDP0000268093 I 0.424
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.422
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.415