Solyc08g082070.2 (Solanum lycopersicum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Solyc08g082070.2 T332695_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.463 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.463 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g082070.2.1 Sox 175 239
Solyc08g082070.2.1 Sox 292 359
Solyc08g082070.2.1 Sox 420 488

Links

Other Sox family TFs
Other Solanum lycopersicum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.730
30190.m010807 Ricinus communis 30190.m010807 I 0.607
Cla011101 Citrullus lanatus Cla011101 I 0.605
TCM_016416 Theobroma cacao TCM_016416 I 0.583
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.578
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.561
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.556
mgf015439m Mimulus guttatus mgf015439m I 0.545
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.531
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.530
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.525
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.520
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.517
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.515
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.513
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.507
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.503
Pm024077 Prunus mume Pm024077 I 0.503
PK10992.1 Cannabis sativa PK10992.1 I 0.495
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.492
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.488
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.488
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.479
Bo1g037180 Brassica oleracea Bo1g037180 I 0.474
Bra013731 Brassica rapa Bra013731 I 0.474
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.473
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.470
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.468
HMGB13 Arabidopsis thaliana AT4G11080 D 0.463
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.461
MDP0000268093 Malus domestica MDP0000268093 I 0.459
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.454
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.451
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.450
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.450
HMGB6 Arabidopsis thaliana AT4G23800 I 0.447
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.446
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.443
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.443
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.439
Si017040m.g Setaria italica Si017040m.g I 0.439
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.439
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.437
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.431
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.429
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.429
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.423
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.422
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.416