chr4.CM0025.190.nd (Lotus japonicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 chr4.CM0025.190.nd T335179_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.436 0.667
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.436 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0025.190.nd Sox 148 215
chr4.CM0025.190.nd Sox 264 330
chr4.CM0025.190.nd Sox 417 485

Links

Other Sox family TFs
Other Lotus japonicus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.589
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.568
TCM_016416 Theobroma cacao TCM_016416 I 0.535
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.534
Cla011101 Citrullus lanatus Cla011101 I 0.532
30190.m010807 Ricinus communis 30190.m010807 I 0.530
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.529
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.524
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.523
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.515
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.513
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.504
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.494
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.493
Ca_05811 Cicer arietinum Ca_05811 I 0.491
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.488
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.486
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.477
Pm024077 Prunus mume Pm024077 I 0.470
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.470
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.469
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.468
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.464
mgf015439m Mimulus guttatus mgf015439m I 0.464
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.460
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.459
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.458
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.456
HMGB6 Arabidopsis thaliana AT4G23800 I 0.455
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.452
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.452
Bra013731 Brassica rapa Bra013731 I 0.447
Bo1g037180 Brassica oleracea Bo1g037180 I 0.447
PK10992.1 Cannabis sativa PK10992.1 I 0.447
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.447
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.447
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.443
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.443
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.442
HMGB13 Arabidopsis thaliana AT4G11080 D 0.436
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.436
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.432
OB02G19930 Oryza brachyantha OB02G19930 N 0.429
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.422
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.421
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.421
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.419