Cucsa.107270 (Cucumis sativus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cucsa.107270 T333951_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.502 0.722
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.502 0.722
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.107270.1 Sox 172 240
Cucsa.107270.1 Sox 288 354
Cucsa.107270.1 Sox 416 484
Cucsa.107270.2 Sox 172 240
Cucsa.107270.2 Sox 288 354
Cucsa.107270.2 Sox 416 456

Links

Other Sox family TFs
Other Cucumis sativus TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.593
Cla011101 Citrullus lanatus Cla011101 I 0.590
TCM_016416 Theobroma cacao TCM_016416 I 0.582
30190.m010807 Ricinus communis 30190.m010807 I 0.579
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.566
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.556
Pm024077 Prunus mume Pm024077 I 0.556
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.549
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.548
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.545
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.544
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.540
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.536
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.533
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.528
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.520
PK10992.1 Cannabis sativa PK10992.1 I 0.513
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.510
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.504
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.503
HMGB13 Arabidopsis thaliana AT4G11080 D 0.502
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.496
HMGB6 Arabidopsis thaliana AT4G23800 I 0.496
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.491
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.487
mgf015439m Mimulus guttatus mgf015439m I 0.487
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.485
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.482
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.482
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.481
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.479
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.478
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.472
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.471
Bra013731 Brassica rapa Bra013731 I 0.463
Bo1g037180 Brassica oleracea Bo1g037180 I 0.463
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.461
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.459
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.458
MDP0000268093 Malus domestica MDP0000268093 I 0.451
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.445
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.443
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.438
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.437
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.436
Bra035256 Brassica rapa Bra035256 I 0.433
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.419