30190.m010807 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 30190.m010807 T333900_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.483 0.673
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.483 0.673
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m010807 Sox 195 265
30190.m010807 Sox 311 377
30190.m010807 Sox 436 504

Links

Other Sox family TFs
Other Ricinus communis TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.626
TCM_016416 Theobroma cacao TCM_016416 I 0.623
Cla011101 Citrullus lanatus Cla011101 I 0.620
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.607
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.605
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.597
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.595
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.584
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.579
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.578
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.568
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.567
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.566
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.564
Pm024077 Prunus mume Pm024077 I 0.564
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.557
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.555
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.537
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.536
mgf015439m Mimulus guttatus mgf015439m I 0.534
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.532
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.530
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.527
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.513
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.497
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.495
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.493
HMGB6 Arabidopsis thaliana AT4G23800 I 0.491
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.491
PK10992.1 Cannabis sativa PK10992.1 I 0.490
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.487
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.485
HMGB13 Arabidopsis thaliana AT4G11080 D 0.483
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.479
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.478
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.474
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.471
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.471
Bo1g037180 Brassica oleracea Bo1g037180 I 0.468
Bra013731 Brassica rapa Bra013731 I 0.468
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.468
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.466
Bra035256 Brassica rapa Bra035256 I 0.465
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.461
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.461
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.458
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.453
Si017040m.g Setaria italica Si017040m.g I 0.448
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.446
MDP0000268093 Malus domestica MDP0000268093 I 0.443
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.437
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.435
OB02G19930 Oryza brachyantha OB02G19930 N 0.428
estExt_Genewise1.C_610004 Physcomitrella patens estExt_Genewise1.C_610004 N 0.418