Cagra.2350s0098 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.2350s0098 T334406_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.550 0.609
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2350s0098.1.p Sox 30 99

Links

Other Sox family TFs
Other Capsella grandiflora TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I 0.000
30138.m004061 Ricinus communis 30138.m004061 I 0.000
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.000
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.000
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.000
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.000
AGL65 Arabidopsis thaliana AT1G18750 D 0.000
AGL94 Arabidopsis thaliana AT1G69540 N 0.000
AGL30 Arabidopsis thaliana AT2G03060 I 0.000
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.000
Bo7g080890 Brassica oleracea Bo7g080890 I 0.000
Bo8g068060 Brassica oleracea Bo8g068060 I 0.000
Bo8g104060 Brassica oleracea Bo8g104060 I 0.000
Bo9g072860 Brassica oleracea Bo9g072860 N 0.000
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.000
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.000
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.000
Bra016544 Brassica rapa Bra016544 I 0.000
Bra017404 Brassica rapa Bra017404 I 0.000
Bra024792 Brassica rapa Bra024792 I 0.000
Bra025685 Brassica rapa Bra025685 I 0.000
Bra031049 Brassica rapa Bra031049 I 0.000
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.000
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.000
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.000
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.000
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.000
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.000
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.000
Ca_16376 Cicer arietinum Ca_16376 I 0.000
Ca_18082 Cicer arietinum Ca_18082 I 0.000
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.000
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.000
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.000
Cla010361 Citrullus lanatus Cla010361 I 0.000
Cla018884 Citrullus lanatus Cla018884 I 0.000
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.000
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.000
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.000
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.000
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.000
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.000
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.000
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.000
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.000
F775_13266 Aegilops tauschii F775_13266 I 0.000
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.000
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.000
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.000
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.000
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.000
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.000
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.000
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.000
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.000
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.000
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.000
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.000
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.000
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.000
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.000
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.000
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.000
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.000
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.000
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.000
MDP0000146231 Malus domestica MDP0000146231 I 0.000
MDP0000146415 Malus domestica MDP0000146415 I 0.000
MDP0000147667 Malus domestica MDP0000147667 I 0.000
MDP0000193129 Malus domestica MDP0000193129 I 0.000
MDP0000773068 Malus domestica MDP0000773068 I 0.000
MDP0000919323 Malus domestica MDP0000919323 I 0.000
mgf000945m Mimulus guttatus mgf000945m I 0.000
mgf004425m Mimulus guttatus mgf004425m I 0.000
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.000
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.000
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.000
OBART11G21780 Oryza barthii OBART11G21780 N 0.000
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.000
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.000
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.000
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.000
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.000
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.000
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.000
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.000
OS11G0658700 Oryza sativa OS11G0658700 N 0.000
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.000
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.000
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.000
PK03147.1 Cannabis sativa PK03147.1 I 0.000
PK21701.1 Cannabis sativa PK21701.1 I 0.000
Pm006479 Prunus mume Pm006479 I 0.000
Pm024895 Prunus mume Pm024895 I 0.000
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.000
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.000
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.000
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.000
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.000
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.000
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.000
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.000
Si028357m.g Setaria italica Si028357m.g N 0.000
TCM_011687 Theobroma cacao TCM_011687 I 0.000
TCM_014051 Theobroma cacao TCM_014051 I 0.000
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.000
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.000
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.000
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.000
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.000
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.000
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.000
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.000
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.000