Bo2g016490 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo2g016490 T000742_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.788 0.920
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.704 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.704 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.704 0.780
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.686 0.800
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.684 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g016490.1 AP2 32 83

Links

Other AP2 family TFs
Other Brassica oleracea TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.704
DREB2G Arabidopsis thaliana AT5G18450 D 0.788
PK07402.1 Cannabis sativa PK07402.1 D 0.684
PK08602.1 Cannabis sativa PK08602.1 D 0.686
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.682
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.719
Bo2g083920 Brassica oleracea Bo2g083920 I 0.705
Bo3g013160 Brassica oleracea Bo3g013160 I 0.724
Bo6g073020 Brassica oleracea Bo6g073020 I 0.681
Bo6g086320 Brassica oleracea Bo6g086320 I 0.701
Bo6g119660 Brassica oleracea Bo6g119660 I 0.704
Bo9g155940 Brassica oleracea Bo9g155940 I 0.788
Bra002159 Brassica rapa Bra002159 I 0.788
Bra003752 Brassica rapa Bra003752 I 0.701
Bra006460 Brassica rapa Bra006460 I 0.724
Bra008200 Brassica rapa Bra008200 I 0.705
Bra015840 Brassica rapa Bra015840 I 0.704
Bra023674 Brassica rapa Bra023674 I 0.848
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.704
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.700
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.700
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.702
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.702
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.691
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.682
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.706
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.680
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.700
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.678
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.696
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.693
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.737
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.704
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.698
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.678
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.699
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.734
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.684
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.788
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.687
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.687
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.772
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.693
TCM_026121 Theobroma cacao TCM_026121 I 0.698
TCM_034132 Theobroma cacao TCM_034132 I 0.697
TCM_043302 Theobroma cacao TCM_043302 I 0.679
TCM_043306 Theobroma cacao TCM_043306 I 0.679
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.699
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.685
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.705
Ca_10770 Cicer arietinum Ca_10770 I 0.700
Cla006713 Citrullus lanatus Cla006713 I 0.700
Cla021113 Citrullus lanatus Cla021113 I 0.702
Pm003634 Prunus mume Pm003634 I 0.730
Pm006274 Prunus mume Pm006274 I 0.703
29680.m001737 Ricinus communis 29680.m001737 I 0.714
29729.m002292 Ricinus communis 29729.m002292 I 0.688
30170.m014115 Ricinus communis 30170.m014115 I 0.706
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.678
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.717
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.706
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.701
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.692
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.677
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.703
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.691
mgf017629m Mimulus guttatus mgf017629m I 0.714
mgf024545m Mimulus guttatus mgf024545m I 0.703
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.713
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.686
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.788
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.704
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.780
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.704
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.780
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.704
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.706
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.690
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.690
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.702
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.763
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.702
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.709
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.740
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.707
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.715
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.707
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.717
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.697
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.695
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.679
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.706
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.706
MDP0000141335 Malus domestica MDP0000141335 I 0.701
MDP0000250924 Malus domestica MDP0000250924 I 0.707
MDP0000250927 Malus domestica MDP0000250927 I 0.697
MDP0000295902 Malus domestica MDP0000295902 I 0.701
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.706
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.677
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.701
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.687
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.788
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.704
PK07829.1 Cannabis sativa PK07829.1 I 0.722
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.700
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.693
Lus10002855.g Linum usitatissimum Lus10002855.g N 0.680