Lus10006127.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10006127.g T008752_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.753 0.939
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.753 0.939
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.753 0.939
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.689 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10006127 AP2 39 90

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.753
DREB2G Arabidopsis thaliana AT5G18450 D 0.689
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.718
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.718
Bo2g083920 Brassica oleracea Bo2g083920 I 0.745
Bo6g086320 Brassica oleracea Bo6g086320 I 0.740
Bo6g119660 Brassica oleracea Bo6g119660 I 0.753
Bo9g155940 Brassica oleracea Bo9g155940 I 0.689
Bra002159 Brassica rapa Bra002159 I 0.689
Bra003752 Brassica rapa Bra003752 I 0.740
Bra008200 Brassica rapa Bra008200 I 0.745
Bra015840 Brassica rapa Bra015840 I 0.753
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.704
F775_01779 Aegilops tauschii F775_01779 I 0.699
F775_02345 Aegilops tauschii F775_02345 I 0.714
F775_32062 Aegilops tauschii F775_32062 I 0.677
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.753
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.754
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.754
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.760
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.760
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.685
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.713
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.703
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.712
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.714
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.754
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.684
OB08G30790 Oryza brachyantha OB08G30790 I 0.718
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.718
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.718
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.718
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.718
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.718
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.718
DREB2C Oryza sativa OS08G0565200 I 0.718
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.752
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.685
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.693
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.771
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.769
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.703
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.694
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.760
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.700
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.689
Si024059m.g Setaria italica Si024059m.g I 0.714
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.693
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.752
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.685
TCM_026121 Theobroma cacao TCM_026121 I 0.748
TCM_034132 Theobroma cacao TCM_034132 I 0.759
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.677
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.677
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.694
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.708
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.714
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.677
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.761
Ca_10770 Cicer arietinum Ca_10770 I 0.754
Cla021113 Citrullus lanatus Cla021113 I 0.767
Cla022803 Citrullus lanatus Cla022803 I 0.791
Pm003634 Prunus mume Pm003634 I 0.697
Pm006274 Prunus mume Pm006274 I 0.767
Pm018989 Prunus mume Pm018989 I 0.703
29680.m001737 Ricinus communis 29680.m001737 I 0.686
30170.m014115 Ricinus communis 30170.m014115 I 0.773
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.690
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.773
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.772
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.791
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.767
mgf017629m Mimulus guttatus mgf017629m I 0.698
mgf024545m Mimulus guttatus mgf024545m I 0.766
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.712
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.708
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.689
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.689
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.753
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.684
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.753
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.684
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.753
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.773
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.745
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.793
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.686
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.686
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.776
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.747
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.710
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.695
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.765
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.700
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.765
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.728
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.799
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.820
MDP0000141335 Malus domestica MDP0000141335 I 0.741
MDP0000147009 Malus domestica MDP0000147009 I 0.695
MDP0000165880 Malus domestica MDP0000165880 I 0.695
MDP0000250924 Malus domestica MDP0000250924 I 0.755
MDP0000250927 Malus domestica MDP0000250927 I 0.723
MDP0000295902 Malus domestica MDP0000295902 I 0.741
MDP0000446783 Malus domestica MDP0000446783 I 0.695
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.773
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.714
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.714
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.748
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.677
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.677
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.689
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.753
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.799
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.754
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N 0.677
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N 0.677
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.686