TCM_042799 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_042799 T256486_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY18184 MADS box 10 58

Links

Other MADS box family TFs
Other Theobroma cacao TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.717
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.729
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.702
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.708
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.708
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.771
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
MDP0000846004 Malus domestica MDP0000846004 I 0.729
MDP0000925348 Malus domestica MDP0000925348 I 0.756
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.717
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.787
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.708
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.793
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
Ca_06495 Cicer arietinum Ca_06495 I 0.727
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
TCM_025670 Theobroma cacao TCM_025670 I 0.812
TCM_025671 Theobroma cacao TCM_025671 I 0.872
TCM_026842 Theobroma cacao TCM_026842 I 0.792
TCM_026845 Theobroma cacao TCM_026845 I 0.812
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.708
Cla005226 Citrullus lanatus Cla005226 I 0.778
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.708
Cla009163 Citrullus lanatus Cla009163 I 0.708
Pm003257 Prunus mume Pm003257 I 0.745
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Pm004396 Prunus mume Pm004396 I 0.756
Ca_13275 Cicer arietinum Ca_13275 I 0.756
30128.m008984 Ricinus communis 30128.m008984 I 0.812
30199.m000879 Ricinus communis 30199.m000879 I 0.723
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.727
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.700
TCM_025676 Theobroma cacao TCM_025676 N 0.750
TCM_042848 Theobroma cacao TCM_042848 N 0.917
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.700