Pavir.Ab00331 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Ab00331 T321213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.854 0.854
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00331.1.p RWP-RK 524 571

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1D Arabidopsis thaliana AT5G51990 D 0.000
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.000
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.000
DREB1A Arabidopsis thaliana AT4G25480 D 0.000
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.000
mgf018934m Mimulus guttatus mgf018934m I 0.000
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.000
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.000
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.000
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.000
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.000
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.000
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.000
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.000
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.000
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.000
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.000
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.000
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.000
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.000
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.000
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.000
mgf026642m Mimulus guttatus mgf026642m I 0.000
mgf022408m Mimulus guttatus mgf022408m I 0.000
mgf018631m Mimulus guttatus mgf018631m I 0.000
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.000
Bo7g110320 Brassica oleracea Bo7g110320 I 0.000
PK23332.1 Cannabis sativa PK23332.1 I 0.000
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.000
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.000
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.000
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.000
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.000
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.000
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.000
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.000
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.000
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.000
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.000
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.000
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.000
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.000
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.000
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.000
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.000
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.000
Bo8g050800 Brassica oleracea Bo8g050800 I 0.000
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.000
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.000
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.000
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.000
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.000
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.000
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.000
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.000
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.000
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.000
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.000
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.000
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.000
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.000
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.000
Bra028290 Brassica rapa Bra028290 I 0.000
Bra019162 Brassica rapa Bra019162 I 0.000
Bra010460 Brassica rapa Bra010460 I 0.000
Bo9g104770 Brassica oleracea Bo9g104770 I 0.000
Cla002362 Citrullus lanatus Cla002362 I 0.000
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.000
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.000
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.000
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.000
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.000
30147.m014313 Ricinus communis 30147.m014313 I 0.000
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.000
Cla006315 Citrullus lanatus Cla006315 I 0.000
Ca_18948 Cicer arietinum Ca_18948 I 0.000
Ca_04504 Cicer arietinum Ca_04504 I 0.000
mgf016974m Mimulus guttatus mgf016974m I 0.000
mgf017136m Mimulus guttatus mgf017136m I 0.000
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.000
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.000
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.000
mgf017477m Mimulus guttatus mgf017477m N 0.000
Pm023777 Prunus mume Pm023777 N 0.000
Ca_03665 Cicer arietinum Ca_03665 N 0.000
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.000
Ca_02407 Cicer arietinum Ca_02407 N 0.000