HMGB1 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT3G51880 T326480_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.681 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G51880.1 Sox 53 122
AT3G51880.2 Sox 53 122
AT3G51880.3 Sox 53 122
AT3G51880.4 Sox 53 122
AT3G51880.5 Sox 53 122

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD6 Arabidopsis thaliana AT1G65620 D 0.000
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.000
LBD25 Arabidopsis thaliana AT3G27650 I 0.000
LBD6 Oryza indica BGIOSGA004955 I 0.000
Bo2g051420 Brassica oleracea Bo2g051420 I 0.000
Bo2g144870 Brassica oleracea Bo2g144870 I 0.000
Bo4g151770 Brassica oleracea Bo4g151770 I 0.000
Bo7g064360 Brassica oleracea Bo7g064360 I 0.000
Bo7g085860 Brassica oleracea Bo7g085860 I 0.000
Bra012112 Brassica rapa Bra012112 I 0.000
Bra032153 Brassica rapa Bra032153 I 0.000
Bra033019 Brassica rapa Bra033019 I 0.000
Bra039733 Brassica rapa Bra039733 I 0.000
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.000
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.000
F775_21760 Aegilops tauschii F775_21760 I 0.000
F775_25656 Aegilops tauschii F775_25656 I 0.000
F775_33210 Aegilops tauschii F775_33210 I 0.000
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.000
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.000
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.000
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.000
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.000
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.000
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.000
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.000
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.000
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.000
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.000
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.000
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.000
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.000
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.000
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.000
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.000
GSMUA_Achr2G13400_001 Musa acuminata GSMUA_Achr2G13400_001 I 0.000
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.000
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.000
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.000
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.000
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.000
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.000
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.000
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.000
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.000
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.000
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.000
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.000
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.000
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.000
OB01G14220 Oryza brachyantha OB01G14220 I 0.000
OB01G48740 Oryza brachyantha OB01G48740 I 0.000
OBART01G04470 Oryza barthii OBART01G04470 I 0.000
OBART01G39990 Oryza barthii OBART01G39990 I 0.000
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.000
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.000
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.000
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.000
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.000
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.000
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.000
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.000
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.000
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.000
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.000
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.000
OS01G0169400 Oryza sativa OS01G0169400 I 0.000
LBD6 Oryza sativa OS01G0889400 I 0.000
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.000
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.000
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.000
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.000
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.000
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.000
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.000
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.000
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.000
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.000
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.000
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.000
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.000
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.000
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.000
Si002599m.g Setaria italica Si002599m.g I 0.000
Si002632m.g Setaria italica Si002632m.g I 0.000
Si024114m.g Setaria italica Si024114m.g I 0.000
Si036905m.g Setaria italica Si036905m.g I 0.000
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.000
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.000
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.000
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.000
TCM_000560 Theobroma cacao TCM_000560 I 0.000
TCM_012190 Theobroma cacao TCM_012190 I 0.000
TCM_016952 Theobroma cacao TCM_016952 I 0.000
TCM_024217 Theobroma cacao TCM_024217 I 0.000
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.000
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.000
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.000
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.000
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.000
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.000
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.000
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.000
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.000
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.000
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.000
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.000
LOB Vitis vinifera VIT_17s0000g09010 I 0.000
Ca_02124 Cicer arietinum Ca_02124 I 0.000
Ca_02125 Cicer arietinum Ca_02125 I 0.000
Ca_07463 Cicer arietinum Ca_07463 I 0.000
Ca_11161 Cicer arietinum Ca_11161 I 0.000
Ca_20200 Cicer arietinum Ca_20200 I 0.000
Ca_24372 Cicer arietinum Ca_24372 I 0.000
Cla005851 Citrullus lanatus Cla005851 I 0.000
Cla010600 Citrullus lanatus Cla010600 I 0.000
Cla017388 Citrullus lanatus Cla017388 I 0.000
Cla019510 Citrullus lanatus Cla019510 I 0.000
Cla020438 Citrullus lanatus Cla020438 I 0.000
Pm010483 Prunus mume Pm010483 I 0.000
29676.m001633 Ricinus communis 29676.m001633 I 0.000
29929.m004500 Ricinus communis 29929.m004500 I 0.000
30147.m013890 Ricinus communis 30147.m013890 I 0.000
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.000
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.000
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.000
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.000
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.000
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.000
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.000
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.000
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.000
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.000
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.000
mgf003146m Mimulus guttatus mgf003146m I 0.000
mgf004296m Mimulus guttatus mgf004296m I 0.000
mgf014755m Mimulus guttatus mgf014755m I 0.000
mgf024603m Mimulus guttatus mgf024603m I 0.000
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.000
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.000
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.000
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.000
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.000
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.000
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.000
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.000
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.000
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.000
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.000
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.000
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.000
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.000
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.000
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.000
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.000
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.000
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.000
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.000
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.000
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.000
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.000
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.000
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.000
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.000
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.000
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.000
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.000
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.000
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.000
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.000
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.000
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.000
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.000
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.000
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.000
MDP0000130659 Malus domestica MDP0000130659 I 0.000
MDP0000254288 Malus domestica MDP0000254288 I 0.000
MDP0000273432 Malus domestica MDP0000273432 I 0.000
MDP0000310871 Malus domestica MDP0000310871 I 0.000
MDP0000643326 Malus domestica MDP0000643326 I 0.000
MDP0000777060 Malus domestica MDP0000777060 I 0.000
MDP0000848210 Malus domestica MDP0000848210 I 0.000
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.000
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.000
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.000
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.000
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.000
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.000
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.000
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.000
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.000
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.000
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.000
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.000
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.000
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.000
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.000
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.000
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.000
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.000
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.000
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.000
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.000
PK13228.1 Cannabis sativa PK13228.1 I 0.000
PK18922.1 Cannabis sativa PK18922.1 I 0.000
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.000
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.000
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.000
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.000
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.000
GSMUA_Achr3G21730_001 Musa acuminata GSMUA_Achr3G21730_001 N 0.000
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.000
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.000