Pavir.J04162 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J04162 T258936_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J04162.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Panicum virgatum TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.771
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.717
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.723
AGL65 Arabidopsis thaliana AT1G18750 D 0.708
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.750
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.745
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.848
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.830
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.891
Bo7g080890 Brassica oleracea Bo7g080890 I 0.739
Bo8g068060 Brassica oleracea Bo8g068060 I 0.792
Bo8g104060 Brassica oleracea Bo8g104060 I 0.792
Bo9g072860 Brassica oleracea Bo9g072860 N 0.783
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.702
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.708
Bra016544 Brassica rapa Bra016544 I 0.792
Bra017404 Brassica rapa Bra017404 I 0.761
Bra024792 Brassica rapa Bra024792 I 0.739
Bra025685 Brassica rapa Bra025685 I 0.766
Bra031049 Brassica rapa Bra031049 I 0.792
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.915
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.702
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.702
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.745
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.766
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.750
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.771
Ca_16376 Cicer arietinum Ca_16376 I 0.761
Ca_18082 Cicer arietinum Ca_18082 I 0.739
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.809
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.729
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.745
Cla010361 Citrullus lanatus Cla010361 I 0.766
Cla018884 Citrullus lanatus Cla018884 I 0.745
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.745
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.708
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.708
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.745
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.792
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.717
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.708
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.708
F775_13266 Aegilops tauschii F775_13266 I 0.957
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.708
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.787
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.826
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.717
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.792
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.792
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.702
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.870
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.761
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.809
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.830
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.913
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.792
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.745
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.745
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.809
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.739
MDP0000146231 Malus domestica MDP0000146231 I 0.739
MDP0000146415 Malus domestica MDP0000146415 I 0.733
MDP0000147667 Malus domestica MDP0000147667 I 0.702
MDP0000193129 Malus domestica MDP0000193129 I 0.750
MDP0000773068 Malus domestica MDP0000773068 I 0.733
MDP0000919323 Malus domestica MDP0000919323 I 0.733
mgf000945m Mimulus guttatus mgf000945m I 0.708
mgf004425m Mimulus guttatus mgf004425m I 0.708
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.978
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.809
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.739
OBART11G21780 Oryza barthii OBART11G21780 N 0.913
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.935
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.935
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.891
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.851
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.729
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.745
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.913
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.913
OS11G0658700 Oryza sativa OS11G0658700 N 0.913
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 1.000
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.957
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.872
PK03147.1 Cannabis sativa PK03147.1 I 0.745
PK21701.1 Cannabis sativa PK21701.1 I 0.812
Pm006479 Prunus mume Pm006479 I 0.717
Pm024895 Prunus mume Pm024895 I 0.766
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.745
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.766
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.717
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.783
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.723
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.957
Si028357m.g Setaria italica Si028357m.g N 0.935
TCM_011687 Theobroma cacao TCM_011687 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.809
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.792
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.830
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.957
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.957
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.957
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.957