Eucgr.B01824 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.B01824 T257933_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B01824.1 MADS box 10 54

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.800
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.822
Aquca_003_00272 Aquilegia coerulea Aquca_003_00272 N 0.756
Aquca_003_00271 Aquilegia coerulea Aquca_003_00271 N 0.756
Aquca_003_00270 Aquilegia coerulea Aquca_003_00270 N 0.756
Aquca_003_00269 Aquilegia coerulea Aquca_003_00269 N 0.733
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.778
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.733
Bo2g104810 Brassica oleracea Bo2g104810 I 0.733
Bo9g078450 Brassica oleracea Bo9g078450 I 0.756
Bra018490 Brassica rapa Bra018490 I 0.756
Bra029469 Brassica rapa Bra029469 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.733
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.733
Ca_06495 Cicer arietinum Ca_06495 I 0.733
Ca_08934 Cicer arietinum Ca_08934 I 0.727
Ca_13275 Cicer arietinum Ca_13275 I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.733
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.711
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.711
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.739
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.711
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.800
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.711
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.756
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.756
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.756
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.778
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.733
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.756
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.711
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.711
mgf026186m Mimulus guttatus mgf026186m I 0.727
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.711
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.711
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.756
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.711
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.711
TCM_026842 Theobroma cacao TCM_026842 I 0.711
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.733