MYB60 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_100910.1 T279363_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB60
M07001_2.00 		Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND		 Dap-seq
OMalley et al.(2016)
MYB60_col 		0.909 1.000
MYB30
M07089_2.00 		Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN		 Dap-seq
OMalley et al.(2016)
MYB30_col_a 		0.872 0.925
MYB30
M07090_2.00 		Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD		 Dap-seq
OMalley et al.(2016)
MYB30_colamp_a 		0.872 0.925
MYB94
M02298_2.00 		Arabidopsis thaliana
DACCGGTH
DACCGGTH		 PBM
Weirauch et al.(2014)
pTH7085 		0.852 0.914
MYB94
M07094_2.00 		Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD		 Dap-seq
OMalley et al.(2016)
MYB94_col_b 		0.852 0.914
ATY13
M07035_2.00 		Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_col_a 		0.841 0.925
ATY13
M07036_2.00 		Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_colamp_a 		0.841 0.925
MYB96
M07153_2.00 		Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD		 Dap-seq
OMalley et al.(2016)
MYB96_colamp_a 		0.833 0.914
MYB96
M07154_2.00 		Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR		 Dap-seq
OMalley et al.(2016)
MYB96_col_b 		0.833 0.914
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_100910.1 Myb 14 61
scaffold_100910.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_13266 Aegilops tauschii F775_13266 I 0.000
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.000
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.000
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.000
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.000
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.000
AGL65 Arabidopsis thaliana AT1G18750 D 0.000
AGL94 Arabidopsis thaliana AT1G69540 N 0.000
AGL30 Arabidopsis thaliana AT2G03060 I 0.000
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.000
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.000
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.000
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.000
Bo6g109050 Brassica oleracea Bo6g109050 I 0.000
Bo7g080890 Brassica oleracea Bo7g080890 I 0.000
Bo8g068060 Brassica oleracea Bo8g068060 I 0.000
Bo8g104060 Brassica oleracea Bo8g104060 I 0.000
Bo9g072860 Brassica oleracea Bo9g072860 N 0.000
Bra004393 Brassica rapa Bra004393 I 0.000
Bra016544 Brassica rapa Bra016544 I 0.000
Bra017404 Brassica rapa Bra017404 I 0.000
Bra024792 Brassica rapa Bra024792 I 0.000
Bra025685 Brassica rapa Bra025685 I 0.000
Bra031049 Brassica rapa Bra031049 I 0.000
PK03147.1 Cannabis sativa PK03147.1 I 0.000
PK21701.1 Cannabis sativa PK21701.1 I 0.000
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.000
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.000
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.000
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.000
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.000
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.000
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.000
Ca_16376 Cicer arietinum Ca_16376 I 0.000
Ca_18082 Cicer arietinum Ca_18082 I 0.000
Cla010361 Citrullus lanatus Cla010361 I 0.000
Cla018884 Citrullus lanatus Cla018884 I 0.000
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.000
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.000
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.000
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.000
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.000
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.000
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.000
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.000
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.000
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.000
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.000
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.000
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.000
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.000
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.000
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.000
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.000
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.000
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.000
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.000
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.000
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.000
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.000
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.000
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.000
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.000
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.000
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.000
MDP0000146231 Malus domestica MDP0000146231 I 0.000
MDP0000146415 Malus domestica MDP0000146415 I 0.000
MDP0000147667 Malus domestica MDP0000147667 I 0.000
MDP0000193129 Malus domestica MDP0000193129 I 0.000
MDP0000773068 Malus domestica MDP0000773068 I 0.000
MDP0000919323 Malus domestica MDP0000919323 I 0.000
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.000
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.000
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.000
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.000
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.000
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.000
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.000
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.000
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.000
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.000
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.000
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.000
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.000
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.000
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.000
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.000
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.000
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.000
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.000
Pm006479 Prunus mume Pm006479 I 0.000
Pm024895 Prunus mume Pm024895 I 0.000
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.000
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.000
29813.m001508 Ricinus communis 29813.m001508 I 0.000
30138.m004061 Ricinus communis 30138.m004061 I 0.000
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.000
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.000
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.000
TCM_011687 Theobroma cacao TCM_011687 I 0.000
TCM_014051 Theobroma cacao TCM_014051 I 0.000
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.000
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.000
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.000
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.000
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.000
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.000