Lus10003904.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10003904.g T334558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.553 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.553 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10003904 Sox 177 245
Lus10003904 Sox 295 361
Lus10003904 Sox 423 491

Links

Other Sox family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_28371 Aegilops tauschii F775_28371 N 0.000
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.000
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
SCL5 Arabidopsis thaliana AT1G50600 N 0.000
SCL21 Arabidopsis thaliana AT2G04890 N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.000
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
BRADI1G23350 Brachypodium distachyon BRADI1G23350 N 0.000
Bo2g149670 Brassica oleracea Bo2g149670 N 0.000
Bo5g079990 Brassica oleracea Bo5g079990 N 0.000
Bo6g022330 Brassica oleracea Bo6g022330 N 0.000
Bo7g030310 Brassica oleracea Bo7g030310 N 0.000
Bo7g089080 Brassica oleracea Bo7g089080 N 0.000
Bo9g009240 Brassica oleracea Bo9g009240 N 0.000
Bo9g009260 Brassica oleracea Bo9g009260 N 0.000
Bra015156 Brassica rapa Bra015156 N 0.000
Bra018860 Brassica rapa Bra018860 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra026077 Brassica rapa Bra026077 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
Bra037509 Brassica rapa Bra037509 N 0.000
PK09018.1 Cannabis sativa PK09018.1 N 0.000
PK15082.1 Cannabis sativa PK15082.1 N 0.000
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.000
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.000
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
Ca_09696 Cicer arietinum Ca_09696 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Ca_13855 Cicer arietinum Ca_13855 N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Cla004565 Citrullus lanatus Cla004565 N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
Cucsa.042310 Cucumis sativus Cucsa.042310 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.000
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
GLYMA14G01960 Glycine max GLYMA14G01960 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.000
MLOC_65838 Hordeum vulgare MLOC_65838 N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.000
chr4.CM0288.500.nc Lotus japonicus chr4.CM0288.500.nc N 0.000
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.000
MTR_3g056110 Medicago truncatula MTR_3g056110 N 0.000
MTR_5g094450 Medicago truncatula MTR_5g094450 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
OBART07G20130 Oryza barthii OBART07G20130 N 0.000
OBART10G07700 Oryza barthii OBART10G07700 N 0.000
OB07G25870 Oryza brachyantha OB07G25870 N 0.000
OB10G15940 Oryza brachyantha OB10G15940 N 0.000
ORGLA07G0258500 Oryza glaberrima ORGLA07G0258500 N 0.000
ORGLA10G0063900 Oryza glaberrima ORGLA10G0063900 N 0.000
OGLUM07G19910 Oryza glumaepatula OGLUM07G19910 N 0.000
OGLUM10G07400 Oryza glumaepatula OGLUM10G07400 N 0.000
BGIOSGA026022 Oryza indica BGIOSGA026022 N 0.000
BGIOSGA032058 Oryza indica BGIOSGA032058 N 0.000
OLONG_015869 Oryza longistaminata OLONG_015869 N 0.000
OMERI07G16830 Oryza meridionalis OMERI07G16830 N 0.000
OMERI10G05450 Oryza meridionalis OMERI10G05450 N 0.000
ONIVA07G18570 Oryza nivara ONIVA07G18570 N 0.000
ONIVA10G07150 Oryza nivara ONIVA10G07150 N 0.000
OPUNC07G19030 Oryza punctata OPUNC07G19030 N 0.000
OPUNC10G06730 Oryza punctata OPUNC10G06730 N 0.000
ORUFI07G20980 Oryza rufipogon ORUFI07G20980 N 0.000
ORUFI10G08100 Oryza rufipogon ORUFI10G08100 N 0.000
CIGR2 Oryza sativa OS07G0583600 N 0.000
Pavir.Ba00562 Panicum virgatum Pavir.Ba00562 N 0.000
Pavir.Bb03224 Panicum virgatum Pavir.Bb03224 N 0.000
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
Si029418m.g Setaria italica Si029418m.g N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.000
Sb02g037650 Sorghum bicolor Sb02g037650 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
Traes_2BS_D007D6598 Triticum aestivum Traes_2BS_D007D6598 N 0.000
Traes_2DS_CCA2FCCAD Triticum aestivum Traes_2DS_CCA2FCCAD N 0.000
Traes_5BL_A7C4DAE11 Triticum aestivum Traes_5BL_A7C4DAE11 N 0.000
SCL13 Vitis vinifera VIT_00s0463g00020 N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000
GRMZM2G098517 Zea mays GRMZM2G098517 N 0.000
GRMZM2G431309 Zea mays GRMZM2G431309 N 0.000