MDP0000394762 (Malus domestica)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 MDP0000394762 T028407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000394762 BED ZF 211 262

Links

Other BED ZF family TFs
Other Malus domestica TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.977
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.977
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.977
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.977
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.977
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.955
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.955
mgf025287m Mimulus guttatus mgf025287m N 0.955
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.955
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.955
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.955
PK27100.1 Cannabis sativa PK27100.1 N 0.955
MDP0000197332 Malus domestica MDP0000197332 N 0.955
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.932
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.932
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.932
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.932
TCM_038144 Theobroma cacao TCM_038144 N 0.909
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.886
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.886
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.886
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.864
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.864
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.864
Bo4g137780 Brassica oleracea Bo4g137780 N 0.864
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.864
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.864
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.864
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.864
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.860
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.841
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.841
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.841
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.841
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.841
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.837
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.818
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.818
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.818
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.818
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.818
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.818
OB08G27850 Oryza brachyantha OB08G27850 N 0.795
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.795
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.795
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.795
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.795
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.795
Si034159m.g Setaria italica Si034159m.g N 0.795
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.795
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.795
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.795
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.795
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.795
HAT Arabidopsis thaliana AT3G42170 N 0.791
Bostr.0556s0643 Boechera stricta Bostr.0556s0643 N 0.791
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.786
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.773
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.773
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.773
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.773
TCM_027266 Theobroma cacao TCM_027266 N 0.773
Si000431m.g Setaria italica Si000431m.g N 0.773
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.773
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.773
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.773
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.773
OB08G27840 Oryza brachyantha OB08G27840 N 0.773
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.773
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.773
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.773
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.773
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.773
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.750
Bo4g107870 Brassica oleracea Bo4g107870 N 0.750
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.750
GLYMA16G32921 Glycine max GLYMA16G32921 N 0.750
Pm013703 Prunus mume Pm013703 N 0.750
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.750
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.750
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.750
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N 0.744
Aquca_020_00067 Aquilegia coerulea Aquca_020_00067 N 0.738
BGIOSGA009862 Oryza indica BGIOSGA009862 N 0.727
BGIOSGA020445 Oryza indica BGIOSGA020445 N 0.727
BGIOSGA018468 Oryza indica BGIOSGA018468 N 0.727
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.727
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.727
Si000761m.g Setaria italica Si000761m.g N 0.727
OB03G40190 Oryza brachyantha OB03G40190 N 0.727
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N 0.727
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N 0.727
OS03G0733400 Oryza sativa OS03G0733400 N 0.727
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N 0.727
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.727
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.727
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.727
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.727
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N 0.727
Bo6g018310 Brassica oleracea Bo6g018310 N 0.727
gene31106-v1.0-hybrid Fragaria vesca gene31106-v1.0-hybrid N 0.721
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.705
Bo6g067130 Brassica oleracea Bo6g067130 N 0.705
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.705
GLYMA09G28061 Glycine max GLYMA09G28061 N 0.705
OS05G0583200 Oryza sativa OS05G0583200 N 0.705
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.705