ABF1 (Arabidopsis lyrata)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 fgenesh2_kg.1__4055__AT1G49720.1 T062352_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.852 0.952
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.852 0.952
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.852 0.952
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.852 0.952
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.852 0.952
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.852 0.952
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.834 0.790
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.834 0.790
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.834 0.790
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.833 0.677
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.807 0.629
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.807 0.629
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.790 0.677
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.790 0.677
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.790 0.629
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4055__AT1G49720.1 bZIP 314 376

Links

Other bZIP family TFs
Other Arabidopsis lyrata TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.875
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.869
Bo5g115300 Brassica oleracea Bo5g115300 I 0.856
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.856
Bra022409 Brassica rapa Bra022409 I 0.856
Bra037533 Brassica rapa Bra037533 I 0.856
ABF1 Arabidopsis thaliana AT1G49720 D 0.852
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.849
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.846
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.846
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.846
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.839
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.839
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.839
Si030114m.g Setaria italica Si030114m.g I 0.835
ABF4 Arabidopsis thaliana AT3G19290 D 0.834
PK18009.1 Cannabis sativa PK18009.1 D 0.833
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.831
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.831
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.830
mgf007524m Mimulus guttatus mgf007524m I 0.827
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.827
mgf002047m Mimulus guttatus mgf002047m I 0.827
mgf014602m Mimulus guttatus mgf014602m I 0.827
TCM_007074 Theobroma cacao TCM_007074 I 0.827
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.827
MDP0000248567 Malus domestica MDP0000248567 I 0.827
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.826
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.825
Pm021430 Prunus mume Pm021430 I 0.824
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.824
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.824
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.823
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.823
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.822
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.819
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.819
Cla016272 Citrullus lanatus Cla016272 I 0.819
Si013904m.g Setaria italica Si013904m.g I 0.818
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.817
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.817
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.817
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.817
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.817
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.817
OS09G0456200 Oryza sativa OS09G0456200 I 0.817
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.817
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.816
TCM_033824 Theobroma cacao TCM_033824 I 0.815
Bo3g073080 Brassica oleracea Bo3g073080 I 0.814
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.814
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.814
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.813
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.811
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.811
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.811
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.811
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.811
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.810
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.809
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.809
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.809
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.809
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.809
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.809
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.809
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.809
30170.m013868 Ricinus communis 30170.m013868 I 0.809
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.809
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.808
29801.m003176 Ricinus communis 29801.m003176 I 0.807
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.807
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.807
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.807
ABF3 Arabidopsis thaliana AT4G34000 D 0.807
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.807
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.807
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.807
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.807
Ca_01548 Cicer arietinum Ca_01548 I 0.807
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.807
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.807
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.807
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.807
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.807
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.807
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.807
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.807
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.807
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.807
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.807
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.807
OS01G0859300 Oryza sativa OS01G0859300 I 0.807
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.807
OB01G46760 Oryza brachyantha OB01G46760 I 0.807
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.807
OBART01G37980 Oryza barthii OBART01G37980 I 0.807
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.807
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.806
PK02169.1 Cannabis sativa PK02169.1 I 0.806
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.806
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.805
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.805
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.805
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.805
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.805
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.805
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.805
Bo6g018480 Brassica oleracea Bo6g018480 I 0.805
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.805
F775_32479 Aegilops tauschii F775_32479 I 0.805
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.804
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.804
mgf020824m Mimulus guttatus mgf020824m I 0.804
Bra018800 Brassica rapa Bra018800 I 0.804
OB08G24950 Oryza brachyantha OB08G24950 I 0.803
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.803
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.803
29625.m000702 Ricinus communis 29625.m000702 I 0.803
Bo1g007700 Brassica oleracea Bo1g007700 I 0.803
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.802
Bo7g116570 Brassica oleracea Bo7g116570 I 0.801
MDP0000296303 Malus domestica MDP0000296303 I 0.801
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.801
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.801
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.801
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.801
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.800
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.800
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.799
Si017618m.g Setaria italica Si017618m.g I 0.799
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.799
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.798
OB09G19140 Oryza brachyantha OB09G19140 I 0.797
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.797
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.796
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.796
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.796
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.796
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.796
BZIP23 Oryza sativa OS02G0766700 I 0.796
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.796
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.796
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.796
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.796
Cla022926 Citrullus lanatus Cla022926 I 0.796
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.796
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.795
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.795
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.795
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.794
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.794
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.794
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.794
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.793
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.792
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.792
Pm001315 Prunus mume Pm001315 I 0.792
Bo1g114840 Brassica oleracea Bo1g114840 I 0.792
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.791
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.791
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.791
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.791
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.791
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.791
Bo6g006970 Brassica oleracea Bo6g006970 I 0.790
OS08G0471950 Oryza sativa OS08G0471950 D 0.790
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.790
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.790
ABF2 Arabidopsis thaliana AT1G45249 D 0.790
Bra040260 Brassica rapa Bra040260 I 0.790
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.790
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.789
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.789
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.789
TCM_034992 Theobroma cacao TCM_034992 I 0.788
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.787
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.787
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N 0.787
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.786
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.786
GSMUA_Achr2G20490_001 Musa acuminata GSMUA_Achr2G20490_001 I 0.785
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.785
ABI5 Arabidopsis thaliana AT2G36270 D 0.784
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.784
Ca_00791 Cicer arietinum Ca_00791 I 0.784
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.784
OBART02G33770 Oryza barthii OBART02G33770 I 0.784
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I 0.783
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.783
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.783
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.782
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I 0.782
Si006889m.g Setaria italica Si006889m.g I 0.782
cassava17300.m1 Manihot esculenta cassava17300.m1 I 0.782
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.782
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.782
Pm005288 Prunus mume Pm005288 I 0.782