Carubv10006251m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10006251m.g T071555_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.879 1.000
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.879 1.000
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.817 0.629
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.817 0.629
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.817 0.629
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.815 0.645
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.814 0.629
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.814 0.629
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.814 0.629
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.814 0.629
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.814 0.629
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.814 0.629
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.799 0.597
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.788 0.597
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.788 0.597
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006251m bZIP 366 428

Links

Other bZIP family TFs
Other Capsella rubella TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF3 Arabidopsis thaliana AT4G34000 D 0.879
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.879
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.879
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.879
Bo1g007700 Brassica oleracea Bo1g007700 I 0.856
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.850
Bo7g116570 Brassica oleracea Bo7g116570 I 0.844
29801.m003176 Ricinus communis 29801.m003176 I 0.842
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.839
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.839
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.833
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.832
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.832
Si030114m.g Setaria italica Si030114m.g I 0.831
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.827
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.827
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.827
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.825
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.825
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.825
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.820
OS09G0456200 Oryza sativa OS09G0456200 I 0.820
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.820
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.820
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.820
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.820
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.820
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.820
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.820
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.818
Bo5g115300 Brassica oleracea Bo5g115300 I 0.818
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.818
Bra022409 Brassica rapa Bra022409 I 0.818
Si013904m.g Setaria italica Si013904m.g I 0.818
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.818
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.818
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.818
Bra037533 Brassica rapa Bra037533 I 0.818
OB09G19140 Oryza brachyantha OB09G19140 I 0.817
Pm021430 Prunus mume Pm021430 I 0.817
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.817
ABF4 Arabidopsis thaliana AT3G19290 D 0.817
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.817
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.817
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.817
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.816
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.816
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.816
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.816
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.815
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.815
mgf002047m Mimulus guttatus mgf002047m I 0.815
mgf007524m Mimulus guttatus mgf007524m I 0.815
PK18009.1 Cannabis sativa PK18009.1 D 0.815
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.815
mgf014602m Mimulus guttatus mgf014602m I 0.815
TCM_007074 Theobroma cacao TCM_007074 I 0.815
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.815
MDP0000248567 Malus domestica MDP0000248567 I 0.815
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.815
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.814
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.814
ABF1 Arabidopsis thaliana AT1G49720 D 0.814
Bra018800 Brassica rapa Bra018800 I 0.814
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.814
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.813
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.813
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.813
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.813
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.812
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.812
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.812
PK02169.1 Cannabis sativa PK02169.1 I 0.812
Bo3g073080 Brassica oleracea Bo3g073080 I 0.811
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.810
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.810
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.810
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.810
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.810
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.809
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.809
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.809
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.809
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.809
Ca_01548 Cicer arietinum Ca_01548 I 0.809
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.808
OB08G24950 Oryza brachyantha OB08G24950 I 0.808
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.808
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.807
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.807
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.807
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.807
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.807
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.807
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.807
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.807
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.807
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.807
30170.m013868 Ricinus communis 30170.m013868 I 0.807
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.806
29625.m000702 Ricinus communis 29625.m000702 I 0.806
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.806
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.806
MDP0000296303 Malus domestica MDP0000296303 I 0.806
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.805
Cla016272 Citrullus lanatus Cla016272 I 0.805
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.805
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.805
Si006889m.g Setaria italica Si006889m.g I 0.805
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.804
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.803
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.803
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.803
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.803
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.803
mgf020824m Mimulus guttatus mgf020824m I 0.802
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.802
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.802
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.802
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.801
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.801
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.801
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.801
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.800
Ca_06458 Cicer arietinum Ca_06458 I 0.800
OS08G0471950 Oryza sativa OS08G0471950 D 0.799
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.799
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.799
Si017618m.g Setaria italica Si017618m.g I 0.799
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.799
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.798
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.798
TCM_033824 Theobroma cacao TCM_033824 I 0.798
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.797
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.797
BZIP23 Oryza sativa OS02G0766700 I 0.796
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.796
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.796
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.796
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.796
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.796
Pm001315 Prunus mume Pm001315 I 0.796
OBART02G33770 Oryza barthii OBART02G33770 I 0.796
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.796
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.796
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.795
OB02G40680 Oryza brachyantha OB02G40680 I 0.795
Cla022926 Citrullus lanatus Cla022926 I 0.794
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.794
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.794
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.794
BZIP46 Oryza sativa OS06G0211200 I 0.794
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.792
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.792
Bo6g018480 Brassica oleracea Bo6g018480 I 0.792
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.791
ABF2 Arabidopsis thaliana AT1G45249 D 0.788
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.788
Bo6g006970 Brassica oleracea Bo6g006970 I 0.788
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.788
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.788
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.788
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.788
ABI5 Arabidopsis thaliana AT2G36270 D 0.788
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.788
F775_32479 Aegilops tauschii F775_32479 I 0.788
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.788
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.788
Bra040260 Brassica rapa Bra040260 I 0.788
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.788
Bra011485 Brassica rapa Bra011485 I 0.788
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.787
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.787
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.786
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.786
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.786
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.786
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.786
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.786
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.786
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.786
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.786
OS01G0859300 Oryza sativa OS01G0859300 I 0.786
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I 0.786
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.786
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.786
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.786
OBART01G37980 Oryza barthii OBART01G37980 I 0.786
OB01G46760 Oryza brachyantha OB01G46760 I 0.786
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.785
Bo1g114840 Brassica oleracea Bo1g114840 I 0.785
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.785
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.784
Pm005288 Prunus mume Pm005288 I 0.784
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.784
mgf002176m Mimulus guttatus mgf002176m I 0.784
OBART08G17810 Oryza barthii OBART08G17810 I 0.783
TCM_022574 Theobroma cacao TCM_022574 I 0.783
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.782
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.782
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.782