Cagra.2481s0016 (Capsella grandiflora)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Cagra.2481s0016 T071508_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.844 0.919
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.844 0.919
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.844 0.919
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.844 0.919
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.844 0.919
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.844 0.919
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.832 0.774
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.832 0.774
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.832 0.774
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.825 0.661
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.814 0.645
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.814 0.645
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.790 0.629
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.788 0.677
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.788 0.677
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2481s0016.1.p bZIP 308 370

Links

Other bZIP family TFs
Other Capsella grandiflora TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.869
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.868
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.851
Bra022409 Brassica rapa Bra022409 I 0.849
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.849
Bra037533 Brassica rapa Bra037533 I 0.849
Bo5g115300 Brassica oleracea Bo5g115300 I 0.849
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.847
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.847
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.844
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.844
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.844
ABF1 Arabidopsis thaliana AT1G49720 D 0.844
Si030114m.g Setaria italica Si030114m.g I 0.843
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.838
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.836
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.832
ABF4 Arabidopsis thaliana AT3G19290 D 0.832
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.830
mgf007524m Mimulus guttatus mgf007524m I 0.830
TCM_007074 Theobroma cacao TCM_007074 I 0.830
MDP0000248567 Malus domestica MDP0000248567 I 0.830
mgf014602m Mimulus guttatus mgf014602m I 0.830
mgf002047m Mimulus guttatus mgf002047m I 0.830
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.829
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.829
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.828
Pm021430 Prunus mume Pm021430 I 0.826
Si013904m.g Setaria italica Si013904m.g I 0.826
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.826
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.826
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.825
PK18009.1 Cannabis sativa PK18009.1 D 0.825
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.825
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.824
Cla016272 Citrullus lanatus Cla016272 I 0.821
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.821
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.821
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.820
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.820
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.819
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.819
OS09G0456200 Oryza sativa OS09G0456200 I 0.819
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.819
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.819
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.819
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.819
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.819
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.819
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.819
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.817
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.817
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.816
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.816
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.816
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.814
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.814
ABF3 Arabidopsis thaliana AT4G34000 D 0.814
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.814
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.814
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.814
TCM_033824 Theobroma cacao TCM_033824 I 0.813
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.813
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.813
Bra018800 Brassica rapa Bra018800 I 0.812
Bo6g018480 Brassica oleracea Bo6g018480 I 0.812
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.811
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.810
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.809
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.809
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.809
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.809
29801.m003176 Ricinus communis 29801.m003176 I 0.809
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.808
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.807
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.807
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.807
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.807
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.807
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.807
30170.m013868 Ricinus communis 30170.m013868 I 0.807
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.807
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.807
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.807
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.807
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.807
Bo3g073080 Brassica oleracea Bo3g073080 I 0.806
PK02169.1 Cannabis sativa PK02169.1 I 0.806
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.806
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.805
Ca_01548 Cicer arietinum Ca_01548 I 0.805
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.805
OB01G46760 Oryza brachyantha OB01G46760 I 0.805
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.805
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.805
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.805
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.805
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.805
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.805
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.805
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.805
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.805
OS01G0859300 Oryza sativa OS01G0859300 I 0.805
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.805
OB09G19140 Oryza brachyantha OB09G19140 I 0.805
OBART01G37980 Oryza barthii OBART01G37980 I 0.805
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.805
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.804
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.804
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.804
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.804
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.804
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.804
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.804
BZIP23 Oryza sativa OS02G0766700 I 0.804
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.804
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.804
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.803
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.803
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.803
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.803
F775_32479 Aegilops tauschii F775_32479 I 0.803
Bo1g007700 Brassica oleracea Bo1g007700 I 0.803
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.803
Bo7g116570 Brassica oleracea Bo7g116570 I 0.803
OB08G24950 Oryza brachyantha OB08G24950 I 0.803
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.803
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.802
mgf020824m Mimulus guttatus mgf020824m I 0.802
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.802
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.802
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.802
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.802
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.802
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.801
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.801
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.800
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.800
29625.m000702 Ricinus communis 29625.m000702 I 0.800
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.799
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.799
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.799
MDP0000296303 Malus domestica MDP0000296303 I 0.798
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.797
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.797
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.796
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.796
Si017618m.g Setaria italica Si017618m.g I 0.796
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.796
Cla022926 Citrullus lanatus Cla022926 I 0.794
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.794
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.794
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.794
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.793
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.792
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.792
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.791
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.791
OBART02G33770 Oryza barthii OBART02G33770 I 0.791
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.791
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.791
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.791
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.791
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.790
OS08G0471950 Oryza sativa OS08G0471950 D 0.790
TCM_034992 Theobroma cacao TCM_034992 I 0.790
Pm001315 Prunus mume Pm001315 I 0.789
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.789
Bo6g006970 Brassica oleracea Bo6g006970 I 0.788
Bra040260 Brassica rapa Bra040260 I 0.788
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.788
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.788
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.788
ABF2 Arabidopsis thaliana AT1G45249 D 0.788
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.787
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.787
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.787
Bo1g114840 Brassica oleracea Bo1g114840 I 0.785
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N 0.785
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.784
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.784
OB02G40680 Oryza brachyantha OB02G40680 I 0.784
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.783
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.783
Si006889m.g Setaria italica Si006889m.g I 0.782
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.782
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.782
GSMUA_Achr2G20490_001 Musa acuminata GSMUA_Achr2G20490_001 I 0.782
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.782
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.782
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.782
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.782