PGSC0003DMG400025889 (Solanum tuberosum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 PGSC0003DMG400025889 T066518_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.829 0.758
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.829 0.758
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.829 0.758
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.827 0.742
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.818 0.661
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.818 0.661
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.818 0.661
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.818 0.661
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.818 0.661
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.818 0.661
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.818 0.613
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.818 0.613
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.799 0.661
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.793 0.790
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.793 0.790
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400066603 bZIP 334 395

Links

Other bZIP family TFs
Other Solanum tuberosum TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.879
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.865
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.851
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.850
Bo5g115300 Brassica oleracea Bo5g115300 I 0.843
Bra037533 Brassica rapa Bra037533 I 0.843
Bra022409 Brassica rapa Bra022409 I 0.843
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.843
Cla016272 Citrullus lanatus Cla016272 I 0.843
Si030114m.g Setaria italica Si030114m.g I 0.843
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.843
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.843
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.839
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.839
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.838
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.836
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.833
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.833
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.833
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.831
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.831
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.830
Pm021430 Prunus mume Pm021430 I 0.829
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.829
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.829
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.829
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.829
ABF4 Arabidopsis thaliana AT3G19290 D 0.829
PK18009.1 Cannabis sativa PK18009.1 D 0.827
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.826
Si013904m.g Setaria italica Si013904m.g I 0.826
MDP0000248567 Malus domestica MDP0000248567 I 0.825
mgf002047m Mimulus guttatus mgf002047m I 0.825
mgf007524m Mimulus guttatus mgf007524m I 0.825
mgf014602m Mimulus guttatus mgf014602m I 0.825
TCM_007074 Theobroma cacao TCM_007074 I 0.825
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.825
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.825
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.824
Bo1g114840 Brassica oleracea Bo1g114840 I 0.824
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.824
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.823
OB01G46760 Oryza brachyantha OB01G46760 I 0.823
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.823
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.823
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.823
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.823
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.823
OBART01G37980 Oryza barthii OBART01G37980 I 0.823
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.823
OS01G0859300 Oryza sativa OS01G0859300 I 0.823
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.823
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.823
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.822
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.822
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.822
OS09G0456200 Oryza sativa OS09G0456200 I 0.822
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.822
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.822
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.822
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.821
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.821
F775_32479 Aegilops tauschii F775_32479 I 0.821
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.821
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.821
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.821
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.821
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.820
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.819
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.819
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.819
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.818
ABF3 Arabidopsis thaliana AT4G34000 D 0.818
ABF1 Arabidopsis thaliana AT1G49720 D 0.818
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.818
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.818
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.818
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.818
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.817
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.816
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.816
Si017618m.g Setaria italica Si017618m.g I 0.816
Bo3g073080 Brassica oleracea Bo3g073080 I 0.816
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.814
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.814
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.813
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.813
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.813
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.812
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.812
29801.m003176 Ricinus communis 29801.m003176 I 0.812
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.812
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.812
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.812
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.812
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.812
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.812
30170.m013868 Ricinus communis 30170.m013868 I 0.812
OB09G19140 Oryza brachyantha OB09G19140 I 0.811
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.811
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.811
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.810
TCM_033824 Theobroma cacao TCM_033824 I 0.810
Ca_01548 Cicer arietinum Ca_01548 I 0.810
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.810
MDP0000296303 Malus domestica MDP0000296303 I 0.810
Bo1g007700 Brassica oleracea Bo1g007700 I 0.810
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.810
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.810
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.810
PK02169.1 Cannabis sativa PK02169.1 I 0.809
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.809
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.809
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.809
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.809
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.809
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.809
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.809
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.809
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.808
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.808
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.808
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.808
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.808
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.808
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.807
29625.m000702 Ricinus communis 29625.m000702 I 0.807
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.807
Bo7g116570 Brassica oleracea Bo7g116570 I 0.807
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.806
mgf020824m Mimulus guttatus mgf020824m I 0.806
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.805
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.805
OB08G24950 Oryza brachyantha OB08G24950 I 0.805
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.805
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.804
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.804
BZIP23 Oryza sativa OS02G0766700 I 0.804
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.804
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.804
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.804
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.804
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.803
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.803
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.803
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.803
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.803
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.803
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.802
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.802
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.801
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.801
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.801
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.800
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.799
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.799
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.799
OS08G0471950 Oryza sativa OS08G0471950 D 0.799
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.798
Cla022926 Citrullus lanatus Cla022926 I 0.798
GLYMA10G08370 Glycine max GLYMA10G08370 I 0.798
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.797
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.797
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.797
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.796
Pm001315 Prunus mume Pm001315 I 0.795
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I 0.795
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.795
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.794
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.794
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.793
ABF2 Arabidopsis thaliana AT1G45249 D 0.793
Bra040260 Brassica rapa Bra040260 I 0.793
Bo6g006970 Brassica oleracea Bo6g006970 I 0.793
OB02G40680 Oryza brachyantha OB02G40680 I 0.793
Traes_3DL_E21790878 Triticum aestivum Traes_3DL_E21790878 I 0.791
OBART02G33770 Oryza barthii OBART02G33770 I 0.791
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.791
F775_19301 Aegilops tauschii F775_19301 I 0.791
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.790
mgf002176m Mimulus guttatus mgf002176m I 0.790
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.790
Bo6g018480 Brassica oleracea Bo6g018480 I 0.789
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.789
GLYMA02G14880 Glycine max GLYMA02G14880 N 0.789
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.789
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.789
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.789
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.789
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.788
Pavir.J36143 Panicum virgatum Pavir.J36143 I 0.787
GRMZM2G132868 Zea mays GRMZM2G132868 I 0.787
Pavir.J06257 Panicum virgatum Pavir.J06257 I 0.787
MDP0000701734 Malus domestica MDP0000701734 I 0.787
Ca_06458 Cicer arietinum Ca_06458 I 0.786
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.786
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.785
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.785
TCM_034992 Theobroma cacao TCM_034992 I 0.785
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.784
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.784
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.784
Lus10006489.g Linum usitatissimum Lus10006489.g I 0.783
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.783
Ca_00791 Cicer arietinum Ca_00791 I 0.783
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.783
Bra018800 Brassica rapa Bra018800 I 0.783
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.783
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I 0.782
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.782
ABI5 Arabidopsis thaliana AT2G36270 D 0.782