Bo6g077080 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g077080 T000863_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.772 0.940
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.772 0.940
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.763 0.920
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.763 0.920
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.740 0.840
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.740 0.840
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.740 0.840
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.737 0.860
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.737 0.860
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.734 0.880
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.696 0.900
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.696 0.900
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.696 0.900
AT3G16280
M06618_2.00 		Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
AT3G16280_col_a 		0.686 0.800
AT3G16280
M06619_2.00 		Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV		 Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a 		0.686 0.800
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.680 0.860
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.680 0.840
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.680 0.840
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.680 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g077080.1 AP2 65 116

Links

Other AP2 family TFs
Other Brassica oleracea TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I
29912.m005463 Ricinus communis 29912.m005463 I 0.685
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I
AGL94 Arabidopsis thaliana AT1G69540 N
AGL30 Arabidopsis thaliana AT2G03060 I
ERF038 Arabidopsis thaliana AT2G35700 D 0.680
AT3G16280 Arabidopsis thaliana AT3G16280 D 0.686
ERF039 Arabidopsis thaliana AT4G16750 D 0.680
BGIOSGA002184 Oryza indica BGIOSGA002184 I 0.687
Bo1g053270 Brassica oleracea Bo1g053270 I 0.680
Bo4g036220 Brassica oleracea Bo4g036220 I 0.696
Bo6g109050 Brassica oleracea Bo6g109050 I
Bo7g080890 Brassica oleracea Bo7g080890 I
Bo7g104770 Brassica oleracea Bo7g104770 I 0.681
Bo8g068060 Brassica oleracea Bo8g068060 I
Bo8g104060 Brassica oleracea Bo8g104060 I
Bo9g072860 Brassica oleracea Bo9g072860 N
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.693
Bostr.28625s0062 Boechera stricta Bostr.28625s0062 I 0.686
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.683
Bra004393 Brassica rapa Bra004393 I
Bra005314 Brassica rapa Bra005314 I 0.696
Bra012693 Brassica rapa Bra012693 I 0.680
Bra016544 Brassica rapa Bra016544 I
Bra017404 Brassica rapa Bra017404 I
Bra024792 Brassica rapa Bra024792 I
Bra025685 Brassica rapa Bra025685 I
Bra031049 Brassica rapa Bra031049 I
Bra040092 Brassica rapa Bra040092 I 0.680
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I
BRADI5G17620 Brachypodium distachyon BRADI5G17620 I 0.693
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.696
Cagra.6624s0013 Capsella grandiflora Cagra.6624s0013 I 0.689
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.683
Carubv10014506m.g Capsella rubella Carubv10014506m.g I 0.689
Carubv10017440m.g Capsella rubella Carubv10017440m.g I
Carubv10020210m.g Capsella rubella Carubv10020210m.g I
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.696
cassava10514.m1 Manihot esculenta cassava10514.m1 I 0.685
cassava11373.m1 Manihot esculenta cassava11373.m1 I 0.685
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
cassava29917.valid.m1 Manihot esculenta cassava29917.valid.m1 I 0.680
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.690
cassava34828.m1 Manihot esculenta cassava34828.m1 I 0.681
Ca_01908 Cicer arietinum Ca_01908 I 0.691
Ca_05941 Cicer arietinum Ca_05941 I 0.692
Ca_16376 Cicer arietinum Ca_16376 I
Ca_18082 Cicer arietinum Ca_18082 I
Ca_18948 Cicer arietinum Ca_18948 I 0.696
Ca_28185 Cicer arietinum Ca_28185 I 0.691
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.686
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.683
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I
chr4.CM0617.510.nd Lotus japonicus chr4.CM0617.510.nd I 0.687
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I 0.683
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.697
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
Cla004187 Citrullus lanatus Cla004187 I 0.692
Cla010361 Citrullus lanatus Cla010361 I
Cla017050 Citrullus lanatus Cla017050 I 0.686
Cla018884 Citrullus lanatus Cla018884 I
Cucsa.112840 Cucumis sativus Cucsa.112840 I
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.686
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.682
Cucsa.284960 Cucumis sativus Cucsa.284960 I
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I 0.679
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.692
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.691
F775_13266 Aegilops tauschii F775_13266 I
F775_14820 Aegilops tauschii F775_14820 I 0.694
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.696
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.680
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.690
gene11882-v1.0-hybrid Fragaria vesca gene11882-v1.0-hybrid I 0.682
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.691
GLYMA02G12131 Glycine max GLYMA02G12131 N
GLYMA05G35741 Glycine max GLYMA05G35741 I 0.689
GLYMA07G35610 Glycine max GLYMA07G35610 N
GLYMA08G03910 Glycine max GLYMA08G03910 I 0.692
GLYMA17G10941 Glycine max GLYMA17G10941 I
GLYMA20G04500 Glycine max GLYMA20G04500 N
Gorai.001G008100 Gossypium raimondii Gorai.001G008100 I 0.685
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I 0.693
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.696
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N
Gorai.006G097000 Gossypium raimondii Gorai.006G097000 I 0.682
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.683
Gorai.010G075300 Gossypium raimondii Gorai.010G075300 I 0.685
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.695
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.683
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.693
LPERR11G18320 Leersia perrieri LPERR11G18320 N
Lus10011123.g Linum usitatissimum Lus10011123.g I 0.683
Lus10019089.g Linum usitatissimum Lus10019089.g I
Lus10026613.g Linum usitatissimum Lus10026613.g I
Lus10030450.g Linum usitatissimum Lus10030450.g I
Lus10034464.g Linum usitatissimum Lus10034464.g I
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.685
Lus10036761.g Linum usitatissimum Lus10036761.g N
Lus10037166.g Linum usitatissimum Lus10037166.g N
Lus10043240.g Linum usitatissimum Lus10043240.g I 0.683
MDP0000146231 Malus domestica MDP0000146231 I
MDP0000146415 Malus domestica MDP0000146415 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000174352 Malus domestica MDP0000174352 I 0.686
MDP0000652413 Malus domestica MDP0000652413 I 0.688
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000919323 Malus domestica MDP0000919323 I
mgf019024m Mimulus guttatus mgf019024m I 0.683
mgf022802m Mimulus guttatus mgf022802m I 0.692
MLOC_11474 Hordeum vulgare MLOC_11474 I
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.688
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.697
MTR_4g108720 Medicago truncatula MTR_4g108720 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
MTR_8g102800 Medicago truncatula MTR_8g102800 I 0.692
OBART01G06440 Oryza barthii OBART01G06440 I 0.683
OGLUM01G07430 Oryza glumaepatula OGLUM01G07430 I 0.683
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N
OLONG_008007 Oryza longistaminata OLONG_008007 N
OMERI01G06530 Oryza meridionalis OMERI01G06530 I 0.683
ONIVA01G08000 Oryza nivara ONIVA01G08000 I 0.687
OPUNC01G06210 Oryza punctata OPUNC01G06210 I 0.683
OPUNC06G16400 Oryza punctata OPUNC06G16400 I 0.678
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.697
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I 0.683
ORGLA01G0061000 Oryza glaberrima ORGLA01G0061000 I 0.683
ORUFI01G06970 Oryza rufipogon ORUFI01G06970 I 0.683
OS01G0200600 Oryza sativa OS01G0200600 I 0.683
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I 0.692
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I 0.692
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.690
Pavir.Eb00249 Panicum virgatum Pavir.Eb00249 I 0.687
Pavir.Gb01129 Panicum virgatum Pavir.Gb01129 I 0.678
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I
Pavir.J04162 Panicum virgatum Pavir.J04162 I
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I
PK03147.1 Cannabis sativa PK03147.1 I
PK29340.1 Cannabis sativa PK29340.1 I 0.685
Pm006479 Prunus mume Pm006479 I
Pm023417 Prunus mume Pm023417 I 0.696
Pm027339 Prunus mume Pm027339 I 0.682
POPTR_0006s17670 Populus trichocarpa POPTR_0006s17670 I 0.685
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
POPTR_0018s09270 Populus trichocarpa POPTR_0018s09270 I 0.685
PRUPE_ppa010130mg Prunus persica PRUPE_ppa010130mg I 0.682
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.696
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.696
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.696
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.696
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
SapurV1A.0540s0020 Salix purpurea SapurV1A.0540s0020 I 0.679
Sb03g002630 Sorghum bicolor Sb03g002630 I 0.687
Sb05g025970 Sorghum bicolor Sb05g025970 I
scaffold_301905.1 Arabidopsis lyrata scaffold_301905.1 I 0.689
SELMODRAFT_26594 Selaginella moellendorffii SELMODRAFT_26594 I 0.686
SELMODRAFT_26604 Selaginella moellendorffii SELMODRAFT_26604 I 0.686
Si002749m.g Setaria italica Si002749m.g I 0.687
Si007144m.g Setaria italica Si007144m.g I 0.694
Si019772m.g Setaria italica Si019772m.g I 0.692
TCM_011687 Theobroma cacao TCM_011687 I
TCM_014051 Theobroma cacao TCM_014051 I
TCM_037811 Theobroma cacao TCM_037811 I 0.685
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.696
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I
Thhalv10022278m.g Eutrema salsugineum Thhalv10022278m.g I 0.689
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.680
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I 0.678
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.694
TRIUR3_33223 Triticum urartu TRIUR3_33223 I
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.691