Solyc03g124110.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc03g124110.1 T005449_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.789 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.789 0.900
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.778 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.778 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.778 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.778 0.900
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.778 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.778 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.778 0.900
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.710 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.710 0.780
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.710 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.710 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.710 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.710 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.710 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.710 0.780
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.697 0.880
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.697 0.880
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.693 0.800
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.679 0.880
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.679 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g124110.1.1 AP2 61 112

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I 0.773
30190.m011120 Ricinus communis 30190.m011120 I 0.747
DREB1C Arabidopsis thaliana AT4G25470 D 0.778
DREB1A Arabidopsis thaliana AT4G25480 D 0.778
DREB1D Arabidopsis thaliana AT5G51990 D 0.789
Bo7g110320 Brassica oleracea Bo7g110320 I 0.697
Bo8g050800 Brassica oleracea Bo8g050800 I 0.000
Bo9g104770 Brassica oleracea Bo9g104770 I 0.789
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.789
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.777
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.803
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.777
Bra010460 Brassica rapa Bra010460 I 0.000
Bra019162 Brassica rapa Bra019162 I 0.697
Bra028290 Brassica rapa Bra028290 I 0.789
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.789
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.806
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.777
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.777
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.789
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.792
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.800
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.756
Ca_02407 Cicer arietinum Ca_02407 N 0.000
Ca_03665 Cicer arietinum Ca_03665 N 0.000
Ca_04504 Cicer arietinum Ca_04504 I 0.755
Ca_18948 Cicer arietinum Ca_18948 I 0.705
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.747
Cla002362 Citrullus lanatus Cla002362 I 0.804
Cla006315 Citrullus lanatus Cla006315 I 0.799
Cla011674 Citrullus lanatus Cla011674 I 0.763
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.782
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.801
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.740
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.711
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.701
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.707
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.711
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.677
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.711
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.701
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.000
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.711
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.701
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.786
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.772
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.785
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.814
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.771
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.791
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.740
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.747
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.800
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.000
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.703
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.706
mgf016974m Mimulus guttatus mgf016974m I 0.719
mgf017477m Mimulus guttatus mgf017477m N 0.000
mgf018631m Mimulus guttatus mgf018631m I 0.719
mgf018934m Mimulus guttatus mgf018934m I 0.719
mgf022408m Mimulus guttatus mgf022408m I 0.719
mgf026642m Mimulus guttatus mgf026642m I 0.808
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.776
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.747
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.738
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.000
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.783
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.780
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.793
PK23332.1 Cannabis sativa PK23332.1 I 0.814
Pm023777 Prunus mume Pm023777 N 0.000
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.778
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.800
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.794
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.802
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.000
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.697
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.697
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.778
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.778
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.789
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.836
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.831
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.000
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.000
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.789
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.803
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.764