Gorai.005G022400 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.005G022400 T049968_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.914 0.980
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.914 0.980
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.902 0.961
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.902 0.902
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.902 0.902
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.902 0.902
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.888 0.941
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.875 0.882
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.875 0.882
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.843
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.824
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.824
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G022400.1 bHLH 267 317
Gorai.005G022400.2 bHLH 267 317
Gorai.005G022400.3 bHLH 267 317
Gorai.005G022400.4 bHLH 267 310

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

902 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29676.m001633 Ricinus communis 29676.m001633 I
29917.m001993 Ricinus communis 29917.m001993 I
29929.m004500 Ricinus communis 29929.m004500 I
30147.m013890 Ricinus communis 30147.m013890 I
AC233943.1_FG002 Zea mays AC233943.1_FG002 I
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I
LBD6 Arabidopsis thaliana AT1G65620 D
LBD12 Arabidopsis thaliana AT2G30130 I
LBD25 Arabidopsis thaliana AT3G27650 I
LOB Arabidopsis thaliana AT5G63090 D
LBD6 Oryza indica BGIOSGA004955 I
BGIOSGA013119 Oryza indica BGIOSGA013119 I
BGIOSGA018046 Oryza indica BGIOSGA018046 I
Bo2g051420 Brassica oleracea Bo2g051420 I
Bo2g144870 Brassica oleracea Bo2g144870 I
Bo2g167820 Brassica oleracea Bo2g167820 I
Bo3g104760 Brassica oleracea Bo3g104760 I
Bo4g059700 Brassica oleracea Bo4g059700 I
Bo7g085860 Brassica oleracea Bo7g085860 I
Bo9g008330 Brassica oleracea Bo9g008330 I
Bo9g017470 Brassica oleracea Bo9g017470 I
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I
Bra018335 Brassica rapa Bra018335 I
Bra025294 Brassica rapa Bra025294 I
Bra033019 Brassica rapa Bra033019 I
Bra035860 Brassica rapa Bra035860 I
Bra038606 Brassica rapa Bra038606 I
Bra039072 Brassica rapa Bra039072 I
Bra039733 Brassica rapa Bra039733 I
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I
Carubv10018238m.g Capsella rubella Carubv10018238m.g I
Carubv10020974m.g Capsella rubella Carubv10020974m.g I
Carubv10025543m.g Capsella rubella Carubv10025543m.g I
Carubv10026811m.g Capsella rubella Carubv10026811m.g I
Carubv10028397m.g Capsella rubella Carubv10028397m.g I
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I
cassava16846.m1 Manihot esculenta cassava16846.m1 I
cassava19770.m1 Manihot esculenta cassava19770.m1 I
cassava32690.m1 Manihot esculenta cassava32690.m1 I
cassava32691.m1 Manihot esculenta cassava32691.m1 I
cassava33952.m1 Manihot esculenta cassava33952.m1 I
cassava3724.m1 Manihot esculenta cassava3724.m1 I
Ca_07463 Cicer arietinum Ca_07463 I
Ca_08824 Cicer arietinum Ca_08824 I
Ca_08998 Cicer arietinum Ca_08998 I
Ca_20200 Cicer arietinum Ca_20200 I
Ca_24372 Cicer arietinum Ca_24372 I
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I
Cla003499 Citrullus lanatus Cla003499 I
Cla005851 Citrullus lanatus Cla005851 I
Cla010600 Citrullus lanatus Cla010600 I
Cla017388 Citrullus lanatus Cla017388 I
Cla019510 Citrullus lanatus Cla019510 I
Cucsa.011300 Cucumis sativus Cucsa.011300 I
Cucsa.098680 Cucumis sativus Cucsa.098680 I
Cucsa.178830 Cucumis sativus Cucsa.178830 I
Cucsa.196600 Cucumis sativus Cucsa.196600 I
Cucsa.250570 Cucumis sativus Cucsa.250570 I
Cucsa.339980 Cucumis sativus Cucsa.339980 I
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I
F775_20715 Aegilops tauschii F775_20715 I
F775_21760 Aegilops tauschii F775_21760 I
F775_25656 Aegilops tauschii F775_25656 I
F775_33210 Aegilops tauschii F775_33210 I
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I
GLYMA02G43030 Glycine max GLYMA02G43030 I
GLYMA04G36080 Glycine max GLYMA04G36080 I
GLYMA05G02530 Glycine max GLYMA05G02530 I
GLYMA05G08870 Glycine max GLYMA05G08870 I
GLYMA06G18861 Glycine max GLYMA06G18861 I
GLYMA11G17890 Glycine max GLYMA11G17890 I
GLYMA13G26020 Glycine max GLYMA13G26020 I
GLYMA15G36310 Glycine max GLYMA15G36310 I
GLYMA16G07770 Glycine max GLYMA16G07770 I
GLYMA16G09720 Glycine max GLYMA16G09720 I
GLYMA17G09380 Glycine max GLYMA17G09380 I
GLYMA18G02780 Glycine max GLYMA18G02780 I
GLYMA19G00390 Glycine max GLYMA19G00390 I
GLYMA19G12650 Glycine max GLYMA19G12650 I
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I
GRMZM2G118250 Zea mays GRMZM2G118250 I
GRMZM2G362627 Zea mays GRMZM2G362627 I
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I
LPERR01G04140 Leersia perrieri LPERR01G04140 I
LPERR01G34430 Leersia perrieri LPERR01G34430 I
LPERR03G21590 Leersia perrieri LPERR03G21590 I
Lus10005313.g Linum usitatissimum Lus10005313.g I
Lus10013610.g Linum usitatissimum Lus10013610.g I
Lus10022264.g Linum usitatissimum Lus10022264.g I
Lus10027676.g Linum usitatissimum Lus10027676.g I
Lus10039940.g Linum usitatissimum Lus10039940.g I
MDP0000130659 Malus domestica MDP0000130659 I
MDP0000254288 Malus domestica MDP0000254288 I
MDP0000265429 Malus domestica MDP0000265429 I
MDP0000273432 Malus domestica MDP0000273432 I
MDP0000562305 Malus domestica MDP0000562305 I
MDP0000643326 Malus domestica MDP0000643326 I
MDP0000848210 Malus domestica MDP0000848210 I
mgf003146m Mimulus guttatus mgf003146m I
mgf004296m Mimulus guttatus mgf004296m I
mgf014755m Mimulus guttatus mgf014755m I
mgf016361m Mimulus guttatus mgf016361m I
mgf024603m Mimulus guttatus mgf024603m I
MLOC_61156 Hordeum vulgare MLOC_61156 I
MLOC_72525 Hordeum vulgare MLOC_72525 I
MTR_3g073690 Medicago truncatula MTR_3g073690 I
MTR_3g077240 Medicago truncatula MTR_3g077240 I
MTR_4g105170 Medicago truncatula MTR_4g105170 I
MTR_6g005070 Medicago truncatula MTR_6g005070 I
MTR_6g005080 Medicago truncatula MTR_6g005080 I
MTR_7g033800 Medicago truncatula MTR_7g033800 I
MTR_8g040900 Medicago truncatula MTR_8g040900 I
OB01G14220 Oryza brachyantha OB01G14220 I
OB01G48740 Oryza brachyantha OB01G48740 I
OB03G34080 Oryza brachyantha OB03G34080 I
OB05G24560 Oryza brachyantha OB05G24560 I
OBART01G04470 Oryza barthii OBART01G04470 I
OBART01G39990 Oryza barthii OBART01G39990 I
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I
OLONG_009404 Oryza longistaminata OLONG_009404 I
OLONG_016086 Oryza longistaminata OLONG_016086 I
OMERI01G04420 Oryza meridionalis OMERI01G04420 I
OMERI01G36900 Oryza meridionalis OMERI01G36900 I
ONIVA01G04930 Oryza nivara ONIVA01G04930 I
ONIVA01G44840 Oryza nivara ONIVA01G44840 I
ONIVA11G15310 Oryza nivara ONIVA11G15310 I
OPUNC01G38680 Oryza punctata OPUNC01G38680 I
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I
OS01G0169400 Oryza sativa OS01G0169400 I
LBD6 Oryza sativa OS01G0889400 I
OS03G0612400 Oryza sativa OS03G0612400 I
OS05G0417000 Oryza sativa OS05G0417000 I
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I
Pavir.J03307 Panicum virgatum Pavir.J03307 I
Pavir.J16692 Panicum virgatum Pavir.J16692 I
Pavir.J22284 Panicum virgatum Pavir.J22284 I
Pavir.J38993 Panicum virgatum Pavir.J38993 I
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I
PK18922.1 Cannabis sativa PK18922.1 I
PK21510.1 Cannabis sativa PK21510.1 I
PK26472.1 Cannabis sativa PK26472.1 I
PK29334.1 Cannabis sativa PK29334.1 I
Pm000193 Prunus mume Pm000193 I
Pm015649 Prunus mume Pm015649 I
Pm024312 Prunus mume Pm024312 I
Pm026450 Prunus mume Pm026450 I
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I
Sb03g004590 Sorghum bicolor Sb03g004590 I
Sb03g042310 Sorghum bicolor Sb03g042310 I
Sb09g020440 Sorghum bicolor Sb09g020440 I
LOB Arabidopsis lyrata scaffold_802995.1 I
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I
Si002599m.g Setaria italica Si002599m.g I
Si002632m.g Setaria italica Si002632m.g I
Si024114m.g Setaria italica Si024114m.g I
Si036905m.g Setaria italica Si036905m.g I
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I
TCM_000560 Theobroma cacao TCM_000560 I
TCM_012190 Theobroma cacao TCM_012190 I
TCM_016952 Theobroma cacao TCM_016952 I
TCM_024217 Theobroma cacao TCM_024217 I
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I
TRIUR3_10339 Triticum urartu TRIUR3_10339 I
TRIUR3_23928 Triticum urartu TRIUR3_23928 I
TRIUR3_32863 Triticum urartu TRIUR3_32863 I
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I
AS2 Vitis vinifera VIT_00s0340g00090 I
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I
LBD25 Vitis vinifera VIT_14s0066g00680 I
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I
LOB Vitis vinifera VIT_17s0000g09010 I