Carubv10017428m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10017428m.g T142728_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017428m C2H2 ZF 300 321
Carubv10017428m C2H2 ZF 320 346

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000651 Ricinus communis 27810.m000651 N 0.827
29908.m006047 Ricinus communis 29908.m006047 N 0.784
30055.m001542 Ricinus communis 30055.m001542 N 0.772
30061.m000294 Ricinus communis 30061.m000294 N 0.791
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.827
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.793
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.000
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.000
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.793
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.000
WIP3 Arabidopsis thaliana AT1G08290 N 0.000
WIP6 Arabidopsis thaliana AT1G13290 N 0.787
WIP2 Arabidopsis thaliana AT3G57670 N 0.827
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.000
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.758
Bo4g111000 Brassica oleracea Bo4g111000 N 0.827
Bo5g008880 Brassica oleracea Bo5g008880 N 0.000
Bo5g015200 Brassica oleracea Bo5g015200 N 0.787
Bo5g081360 Brassica oleracea Bo5g081360 N 0.761
Bo6g073120 Brassica oleracea Bo6g073120 N 0.827
Bo8g092070 Brassica oleracea Bo8g092070 N 0.827
Bo8g112550 Brassica oleracea Bo8g112550 N 0.000
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.000
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.787
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.827
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.000
Bra003295 Brassica rapa Bra003295 N 0.827
Bra007346 Brassica rapa Bra007346 N 0.825
Bra014612 Brassica rapa Bra014612 N 0.827
Bra018638 Brassica rapa Bra018638 N 0.000
Bra019822 Brassica rapa Bra019822 N 0.787
Bra031621 Brassica rapa Bra031621 N 0.000
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.000
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.000
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.758
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.000
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.827
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.000
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.787
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.000
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.000
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.787
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.000
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.772
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.772
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.827
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.797
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.827
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.784
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.793
Ca_07051 Cicer arietinum Ca_07051 N 0.000
Ca_07269 Cicer arietinum Ca_07269 N 0.827
Ca_08435 Cicer arietinum Ca_08435 N 0.793
Ca_16482 Cicer arietinum Ca_16482 N 0.767
Ca_21713 Cicer arietinum Ca_21713 N 0.811
Ca_24699 Cicer arietinum Ca_24699 N 0.793
Ca_27078 Cicer arietinum Ca_27078 N 0.760
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.827
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.793
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.766
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.778
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.827
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.821
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.772
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.784
Cla000184 Citrullus lanatus Cla000184 N 0.759
Cla002714 Citrullus lanatus Cla002714 N 0.793
Cla008187 Citrullus lanatus Cla008187 N 0.827
Cla008675 Citrullus lanatus Cla008675 N 0.797
Cla015481 Citrullus lanatus Cla015481 N 0.767
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.767
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.767
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.759
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.827
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.793
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.827
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.827
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.793
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.772
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.000
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.811
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.000
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.764
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.772
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.793
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.827
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.811
F775_11193 Aegilops tauschii F775_11193 N 0.000
F775_14972 Aegilops tauschii F775_14972 N 0.000
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.000
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.000
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.827
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.784
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.827
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.821
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.772
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.793
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.793
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.827
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.791
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.787
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.772
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.772
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.772
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.791
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.760
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.791
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.772
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.760
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.791
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.827
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.787
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.772
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.827
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.827
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.774
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.774
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.772
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.821
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.774
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.778
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.793
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.811
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.000
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.811
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.758
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.000
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.758
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.797
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.811
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.788
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.791
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.827
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.821
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.811
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.000
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.000
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.758
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.758
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.000
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.000
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.793
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.788
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.802
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.802
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.000
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.793
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.788
MDP0000131949 Malus domestica MDP0000131949 N 0.772
MDP0000142494 Malus domestica MDP0000142494 N 0.785
MDP0000144266 Malus domestica MDP0000144266 N 0.786
MDP0000300013 Malus domestica MDP0000300013 N 0.772
MDP0000303483 Malus domestica MDP0000303483 N 0.793
MDP0000403797 Malus domestica MDP0000403797 N 0.821
MDP0000573922 Malus domestica MDP0000573922 N 0.775
MDP0000580545 Malus domestica MDP0000580545 N 0.821
MDP0000601705 Malus domestica MDP0000601705 N 0.827
MDP0000899280 Malus domestica MDP0000899280 N 0.784
mgf019910m Mimulus guttatus mgf019910m N 0.797
mgf022319m Mimulus guttatus mgf022319m N 0.767
mgf022981m Mimulus guttatus mgf022981m N 0.000
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.000
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.811
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.793
OB05G26090 Oryza brachyantha OB05G26090 N 0.000
OB08G26650 Oryza brachyantha OB08G26650 N 0.758
OBART01G37960 Oryza barthii OBART01G37960 N 0.000
OBART06G20890 Oryza barthii OBART06G20890 N 0.811
OBART08G19670 Oryza barthii OBART08G19670 N 0.758
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.000
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.000
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.758
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.758
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.000
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.758
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.758
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.000
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.758
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.758
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.000
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.758
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.758
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.821
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.778
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.763
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.772
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.827
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.784
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.000
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.758
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.758
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.000
OS01G0859100 Oryza sativa OS01G0859100 N 0.000
OS08G0504000 Oryza sativa OS08G0504000 N 0.758
OS09G0485600 Oryza sativa OS09G0485600 N 0.758
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.000
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.758
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.758
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.000
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.788
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.000
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.821
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.827
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.000
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.803
PK03705.1 Cannabis sativa PK03705.1 N 0.827
PK05257.1 Cannabis sativa PK05257.1 N 0.000
Pm000471 Prunus mume Pm000471 N 0.821
Pm001374 Prunus mume Pm001374 N 0.772
Pm025853 Prunus mume Pm025853 N 0.827
Pm029018 Prunus mume Pm029018 N 0.793
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.000
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.797
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.768
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.772
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.797
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.772
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.793
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.827
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.827
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.793
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.772
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.821
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.827
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.778
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.772
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.000
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.000
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.764
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.000
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.000
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.758
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.000
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.811
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.811
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.787
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.787
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.793
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.793
Si013819m.g Setaria italica Si013819m.g N 0.758
Si022296m.g Setaria italica Si022296m.g N 0.000
Si029897m.g Setaria italica Si029897m.g N 0.000
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.788
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.000
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.803
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.821
TCM_005892 Theobroma cacao TCM_005892 N 0.797
TCM_011858 Theobroma cacao TCM_011858 N 0.793
TCM_024788 Theobroma cacao TCM_024788 N 0.827
TCM_034881 Theobroma cacao TCM_034881 N 0.778
TCM_040610 Theobroma cacao TCM_040610 N 0.811
TCM_041441 Theobroma cacao TCM_041441 N 0.772
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.827
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.000
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.787
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.000
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.000
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.000
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.811
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.000
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.811
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.000
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.793
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.772
NTT Vitis vinifera VIT_08s0007g08070 N 0.827
TT1 Vitis vinifera VIT_18s0001g05860 N 0.778