Pavir.J39953 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.J39953 T203099_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J39953.1.p GRAS 96 461

Links

Other GRAS family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003447 Ricinus communis 29794.m003447 I 0.000
29846.m000184 Ricinus communis 29846.m000184 I 0.000
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.000
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.000
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.000
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.000
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.000
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.000
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.000
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.000
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.000
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.000
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.000
Bo1g010040 Brassica oleracea Bo1g010040 I 0.000
Bo1g144510 Brassica oleracea Bo1g144510 I 0.000
Bo3g007070 Brassica oleracea Bo3g007070 I 0.000
Bo3g171130 Brassica oleracea Bo3g171130 I 0.000
Bo3g179620 Brassica oleracea Bo3g179620 I 0.000
Bo7g115810 Brassica oleracea Bo7g115810 I 0.000
Bo9g171130 Brassica oleracea Bo9g171130 I 0.000
Bo9g184660 Brassica oleracea Bo9g184660 I 0.000
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.000
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.000
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.000
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.000
Bra006102 Brassica rapa Bra006102 I 0.000
Bra008956 Brassica rapa Bra008956 I 0.000
Bra009597 Brassica rapa Bra009597 I 0.000
Bra011376 Brassica rapa Bra011376 I 0.000
Bra034067 Brassica rapa Bra034067 I 0.000
Bra034531 Brassica rapa Bra034531 I 0.000
Bra037045 Brassica rapa Bra037045 I 0.000
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.000
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.000
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.000
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.000
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.000
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.000
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.000
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.000
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.000
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.000
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.000
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.000
Ca_01884 Cicer arietinum Ca_01884 I 0.000
Ca_14925 Cicer arietinum Ca_14925 I 0.000
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.000
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.000
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.000
Cla018173 Citrullus lanatus Cla018173 I 0.000
Cla022565 Citrullus lanatus Cla022565 I 0.000
Cla023357 Citrullus lanatus Cla023357 I 0.000
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.000
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.000
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.000
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.000
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.000
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.000
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.000
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.000
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.000
F775_05724 Aegilops tauschii F775_05724 I 0.000
F775_10106 Aegilops tauschii F775_10106 I 0.000
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.000
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.000
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.000
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.000
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.000
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.000
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.000
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.000
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.000
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.000
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.000
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.000
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.000
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.000
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.000
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.000
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.000
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.000
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.000
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.000
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.000
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.000
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.000
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.000
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.000
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.000
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.000
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.000
MDP0000179225 Malus domestica MDP0000179225 I 0.000
MDP0000219581 Malus domestica MDP0000219581 I 0.000
MDP0000295807 Malus domestica MDP0000295807 I 0.000
mgf006384m Mimulus guttatus mgf006384m I 0.000
mgf008601m Mimulus guttatus mgf008601m I 0.000
mgf019610m Mimulus guttatus mgf019610m I 0.000
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.000
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.000
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.000
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.000
OB01G18340 Oryza brachyantha OB01G18340 I 0.000
OB01G45570 Oryza brachyantha OB01G45570 I 0.000
OB12G16480 Oryza brachyantha OB12G16480 I 0.000
OBART01G08110 Oryza barthii OBART01G08110 I 0.000
OBART05G19200 Oryza barthii OBART05G19200 I 0.000
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.000
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.000
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.000
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.000
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.000
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.000
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.000
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.000
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.000
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.000
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.000
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.000
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.000
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.000
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.000
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.000
MYB3R-2 Oryza sativa OS01G0841500 I 0.000
OS05G0459000 Oryza sativa OS05G0459000 I 0.000
OS12G0238000 Oryza sativa OS12G0238000 I 0.000
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.000
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.000
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.000
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.000
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.000
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.000
PGSC0003DMG400003055 Solanum tuberosum PGSC0003DMG400003055 I 0.000
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.000
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.000
PK11664.1 Cannabis sativa PK11664.1 I 0.000
PK12011.1 Cannabis sativa PK12011.1 D 0.000
PK22174.1 Cannabis sativa PK22174.1 I 0.000
Pm002704 Prunus mume Pm002704 I 0.000
Pm005124 Prunus mume Pm005124 I 0.000
Pm018007 Prunus mume Pm018007 I 0.000
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.000
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.000
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.000
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.000
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.000
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.000
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.000
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.000
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.000
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.000
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.000
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.000
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.000
Si000842m.g Setaria italica Si000842m.g I 0.000
Si021484m.g Setaria italica Si021484m.g I 0.000
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.000
Solyc08g080580.2 Solanum lycopersicum Solyc08g080580.2 I 0.000
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.000
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.000
TCM_021936 Theobroma cacao TCM_021936 I 0.000
TCM_047091 Theobroma cacao TCM_047091 I 0.000
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.000
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.000
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.000
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.000
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.000
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.000
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.000
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.000
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.000
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.000
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.000
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.000
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.000
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.000
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.000
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.000
MYB3R-4 Vitis vinifera VIT_04s0008g03790 I 0.000
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.000
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.000