evm.TU.contig_27553.5 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_27553.5 T258047_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_27553.5 MADS box 17 63

Links

Other MADS box family TFs
Other Carica papaya TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.723
30099.m001671 Ricinus communis 30099.m001671 N 0.723
30099.m001672 Ricinus communis 30099.m001672 N 0.729
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.702
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
AGL23 Arabidopsis thaliana AT1G65360 N 0.702
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
Bo1g112460 Brassica oleracea Bo1g112460 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.723
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.723
Bra032057 Brassica rapa Bra032057 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.702
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.723
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.723
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.723
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.723
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.745
Cla006571 Citrullus lanatus Cla006571 N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_26687.1 Carica papaya evm.TU.contig_26687.1 N 0.936
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.745
evm.TU.contig_28241.3 Carica papaya evm.TU.contig_28241.3 N 0.957
evm.TU.contig_30005.1 Carica papaya evm.TU.contig_30005.1 N 0.917
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.750
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.958
evm.TU.contig_31965.2 Carica papaya evm.TU.contig_31965.2 N 0.894
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.750
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.979
evm.TU.contig_34792.1 Carica papaya evm.TU.contig_34792.1 N 0.936
evm.TU.contig_35176.1 Carica papaya evm.TU.contig_35176.1 N 0.957
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.723
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_37047 Carica papaya evm.TU.contig_37047 N 0.875
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.contig_38122.1 Carica papaya evm.TU.contig_38122.1 N 0.936
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.979
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.938
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.979
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 1.000
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.702
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.750
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.702
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N 0.957
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.958
evm.TU.supercontig_347.4 Carica papaya evm.TU.supercontig_347.4 N 0.936
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.702
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_439.3 Carica papaya evm.TU.supercontig_439.3 N 0.917
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.917
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.702
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.702
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.745
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.702
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.723
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.702
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.745
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
Pm021018 Prunus mume Pm021018 N 0.702
Pm021070 Prunus mume Pm021070 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.729
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.723
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.702
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.745
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.723
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.745
TCM_006323 Theobroma cacao TCM_006323 N 0.745
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.745
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.702
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.702