OBART03G05550 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART03G05550 T003099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.811 0.940
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.761 0.860
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.684 0.800
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.682 0.760
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.679 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.679 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G05550.1 AP2 26 77

Links

Other AP2 family TFs
Other Oryza barthii TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.679
DREB2G Arabidopsis thaliana AT5G18450 D 0.682
BGIOSGA026461 Oryza indica BGIOSGA026461 I
BGIOSGA026464 Oryza indica BGIOSGA026464 I
Bo2g083920 Brassica oleracea Bo2g083920 I
Bo6g086320 Brassica oleracea Bo6g086320 I 0.682
Bo6g119660 Brassica oleracea Bo6g119660 I 0.679
Bo9g155940 Brassica oleracea Bo9g155940 I 0.682
Bra002159 Brassica rapa Bra002159 I 0.682
Bra003752 Brassica rapa Bra003752 I 0.682
Bra008200 Brassica rapa Bra008200 I
Bra015840 Brassica rapa Bra015840 I 0.679
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I
F775_01779 Aegilops tauschii F775_01779 I
F775_02345 Aegilops tauschii F775_02345 I
F775_32062 Aegilops tauschii F775_32062 I
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.679
GLYMA04G03070 Glycine max GLYMA04G03070 I
GLYMA06G03110 Glycine max GLYMA06G03110 I
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.677
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.677
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I
LPERR08G12790 Leersia perrieri LPERR08G12790 I
LPERR08G20650 Leersia perrieri LPERR08G20650 I
MLOC_12223 Hordeum vulgare MLOC_12223 I
MLOC_66580 Hordeum vulgare MLOC_66580 I
MTR_1g023170 Medicago truncatula MTR_1g023170 I
OB08G30790 Oryza brachyantha OB08G30790 I
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I
OMERI08G18820 Oryza meridionalis OMERI08G18820 I
ONIVA09G01190 Oryza nivara ONIVA09G01190 I
OPUNC08G21890 Oryza punctata OPUNC08G21890 I
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I
DREB2C Oryza sativa OS08G0565200 I
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.682
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.678
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.690
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.682
Si024059m.g Setaria italica Si024059m.g I
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.682
TCM_026121 Theobroma cacao TCM_026121 I
TCM_034132 Theobroma cacao TCM_034132 I
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I
TRIUR3_17409 Triticum urartu TRIUR3_17409 I
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I
Ca_10770 Cicer arietinum Ca_10770 I
Cla021113 Citrullus lanatus Cla021113 I
Cla022803 Citrullus lanatus Cla022803 I
Pm003634 Prunus mume Pm003634 I 0.690
Pm006274 Prunus mume Pm006274 I
Pm018989 Prunus mume Pm018989 I
29680.m001737 Ricinus communis 29680.m001737 I
30170.m014115 Ricinus communis 30170.m014115 I
cassava25887.m1 Manihot esculenta cassava25887.m1 I
cassava41240.m1 Manihot esculenta cassava41240.m1 I
cassava45031.m1 Manihot esculenta cassava45031.m1 I
Cucsa.342750 Cucumis sativus Cucsa.342750 I
mgf017629m Mimulus guttatus mgf017629m I 0.695
mgf024545m Mimulus guttatus mgf024545m I
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.682
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.679
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.677
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.679
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.677
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.679
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.677
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.677
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.681
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I
Lus10006127.g Linum usitatissimum Lus10006127.g I
Lus10010632.g Linum usitatissimum Lus10010632.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.677
Lus10024298.g Linum usitatissimum Lus10024298.g I
MDP0000141335 Malus domestica MDP0000141335 I
MDP0000147009 Malus domestica MDP0000147009 I
MDP0000165880 Malus domestica MDP0000165880 I
MDP0000250924 Malus domestica MDP0000250924 I
MDP0000250927 Malus domestica MDP0000250927 I 0.682
MDP0000295902 Malus domestica MDP0000295902 I
MDP0000446783 Malus domestica MDP0000446783 I
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I
Pavir.J22169 Panicum virgatum Pavir.J22169 I
Pavir.J25464 Panicum virgatum Pavir.J25464 I
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.682
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.679
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N