MTR_0160s0030 (Medicago truncatula)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MTR_0160s0030 T123761_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.811 0.891
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.811 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.793 0.717
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.787 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.770 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.770 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.770 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.769 0.674
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.760 0.696
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.760 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH16508 C2H2 ZF 240 262
KEH16508 C2H2 ZF 286 308

Links

Other C2H2 ZF family TFs
Other Medicago truncatula TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.000
DREB2G Arabidopsis thaliana AT5G18450 D 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.000
Bo2g016490 Brassica oleracea Bo2g016490 I 0.000
Bo2g083920 Brassica oleracea Bo2g083920 I 0.000
Bo3g013160 Brassica oleracea Bo3g013160 I 0.000
Bo6g086320 Brassica oleracea Bo6g086320 I 0.000
Bo6g119660 Brassica oleracea Bo6g119660 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.000
Bra003752 Brassica rapa Bra003752 I 0.000
Bra006460 Brassica rapa Bra006460 I 0.000
Bra008200 Brassica rapa Bra008200 I 0.000
Bra015840 Brassica rapa Bra015840 I 0.000
Bra023674 Brassica rapa Bra023674 I 0.000
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.000
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.000
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.000
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.000
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.000
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.000
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.000
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.000
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.000
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.000
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.000
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.000
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.000
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.000
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.000
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.000
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.000
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.000
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
TCM_026121 Theobroma cacao TCM_026121 I 0.000
TCM_034132 Theobroma cacao TCM_034132 I 0.000
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.000
Ca_10770 Cicer arietinum Ca_10770 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Cla021113 Citrullus lanatus Cla021113 I 0.000
Cla022803 Citrullus lanatus Cla022803 I 0.000
Pm003634 Prunus mume Pm003634 I 0.000
Pm006274 Prunus mume Pm006274 I 0.000
29680.m001737 Ricinus communis 29680.m001737 I 0.000
29729.m002292 Ricinus communis 29729.m002292 I 0.000
30170.m014115 Ricinus communis 30170.m014115 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.000
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.000
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.000
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.000
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.000
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
mgf024545m Mimulus guttatus mgf024545m I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.000
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.000
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.000
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.000
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.000
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.000
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.000
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.000
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.000
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.000
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.000
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.000
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.000
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.000
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.000
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.000
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.000
MDP0000141335 Malus domestica MDP0000141335 I 0.000
MDP0000153866 Malus domestica MDP0000153866 I 0.000
MDP0000223609 Malus domestica MDP0000223609 I 0.000
MDP0000250924 Malus domestica MDP0000250924 I 0.000
MDP0000250927 Malus domestica MDP0000250927 I 0.000
MDP0000295902 Malus domestica MDP0000295902 I 0.000
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.000
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.000
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.000
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.000
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.000
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000