Gorai.006G138700 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G138700 T143026_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G138700.1 C2H2 ZF 285 306
Gorai.006G138700.1 C2H2 ZF 305 331

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000651 Ricinus communis 27810.m000651 N 0.821
29908.m006047 Ricinus communis 29908.m006047 N 0.778
30055.m001542 Ricinus communis 30055.m001542 N 0.778
30061.m000294 Ricinus communis 30061.m000294 N 0.791
30169.m006417 Ricinus communis 30169.m006417 N 0.818
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.821
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.000
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.000
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.000
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.758
Bo4g111000 Brassica oleracea Bo4g111000 N 0.821
Bo5g008880 Brassica oleracea Bo5g008880 N 0.000
Bo5g081360 Brassica oleracea Bo5g081360 N 0.761
Bo6g073120 Brassica oleracea Bo6g073120 N 0.821
Bo8g092070 Brassica oleracea Bo8g092070 N 0.821
Bo8g112550 Brassica oleracea Bo8g112550 N 0.000
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.000
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.821
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.000
Bra003295 Brassica rapa Bra003295 N 0.821
Bra007346 Brassica rapa Bra007346 N 0.819
Bra014612 Brassica rapa Bra014612 N 0.821
Bra018638 Brassica rapa Bra018638 N 0.000
Bra031621 Brassica rapa Bra031621 N 0.000
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.758
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.000
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.821
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.000
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.000
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.821
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.778
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.772
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.812
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.821
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.791
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.821
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.778
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.811
Ca_07051 Cicer arietinum Ca_07051 N 0.000
Ca_07269 Cicer arietinum Ca_07269 N 0.821
Ca_16482 Cicer arietinum Ca_16482 N 0.773
Ca_21713 Cicer arietinum Ca_21713 N 0.811
Ca_27078 Cicer arietinum Ca_27078 N 0.000
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.821
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.772
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.778
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.821
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.827
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.778
Cla000184 Citrullus lanatus Cla000184 N 0.759
Cla008187 Citrullus lanatus Cla008187 N 0.821
Cla008675 Citrullus lanatus Cla008675 N 0.803
Cla015481 Citrullus lanatus Cla015481 N 0.767
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.767
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.774
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.759
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.821
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.821
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.821
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.778
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.000
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.811
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.000
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.758
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.778
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.821
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.817
F775_14972 Aegilops tauschii F775_14972 N 0.000
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.821
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.827
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.772
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.821
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.791
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.778
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.778
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.778
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.791
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.000
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.791
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.778
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.000
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.791
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.821
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.778
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.821
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.821
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.767
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.767
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.778
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.767
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.778
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.811
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.811
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.758
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.000
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.758
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.791
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.811
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.817
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.782
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.791
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.821
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.827
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.817
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.000
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.758
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.758
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.000
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.000
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.782
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.808
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.808
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.000
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.782
MDP0000131949 Malus domestica MDP0000131949 N 0.778
MDP0000142494 Malus domestica MDP0000142494 N 0.779
MDP0000300013 Malus domestica MDP0000300013 N 0.778
MDP0000403797 Malus domestica MDP0000403797 N 0.827
MDP0000573922 Malus domestica MDP0000573922 N 0.775
MDP0000580545 Malus domestica MDP0000580545 N 0.827
MDP0000601705 Malus domestica MDP0000601705 N 0.821
mgf019910m Mimulus guttatus mgf019910m N 0.803
mgf022319m Mimulus guttatus mgf022319m N 0.767
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.000
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.811
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.821
NTT Vitis vinifera VIT_08s0007g08070 N 0.821
OB08G26650 Oryza brachyantha OB08G26650 N 0.758
OBART06G20890 Oryza barthii OBART06G20890 N 0.811
OBART08G19670 Oryza barthii OBART08G19670 N 0.758
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.758
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.758
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.758
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.758
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.758
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.758
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.758
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.758
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.827
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.778
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.763
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.778
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.821
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.758
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.758
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.758
OS08G0504000 Oryza sativa OS08G0504000 N 0.758
OS09G0485600 Oryza sativa OS09G0485600 N 0.758
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.000
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.758
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.758
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.782
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.000
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.827
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.821
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.797
PK03705.1 Cannabis sativa PK03705.1 N 0.821
PK05257.1 Cannabis sativa PK05257.1 N 0.000
Pm000471 Prunus mume Pm000471 N 0.827
Pm001374 Prunus mume Pm001374 N 0.778
Pm025853 Prunus mume Pm025853 N 0.821
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.000
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.791
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.768
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.818
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.778
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.791
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.778
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.821
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.821
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.778
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.827
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.818
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.821
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.772
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.778
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.000
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.000
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.757
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.757
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.000
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.000
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.758
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.811
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.811
Si013819m.g Setaria italica Si013819m.g N 0.758
Si029897m.g Setaria italica Si029897m.g N 0.000
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.782
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.797
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.827
TCM_005892 Theobroma cacao TCM_005892 N 0.791
TCM_024788 Theobroma cacao TCM_024788 N 0.821
TCM_034881 Theobroma cacao TCM_034881 N 0.778
TCM_040610 Theobroma cacao TCM_040610 N 0.817
TCM_041441 Theobroma cacao TCM_041441 N 0.778
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.821
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.000
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.000
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.811
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.000
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.811
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.000
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.000
TT1 Vitis vinifera VIT_18s0001g05860 N 0.778
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.797
WIP2 Arabidopsis thaliana AT3G57670 N 0.821
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.778