Gfo_R015265 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R015265 T135872_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KLF11
M00242_2.00 		Homo sapiens
MCGCCCCC
GGGGGCGK		 PBM
Barrera et al.(2016)
KLF11_REF 		0.782 0.884
KLF11
M04554_2.00 		Homo sapiens
VMCMCRCCCMYNMCACGCCCMC
GKGGGCGTGKNRKGGGYGKGKB		 SELEX
Yin et al.(2017)
KLF11_eDBD_HT-SELEX 		0.782 0.884
KLF11
M10261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FKLF_Q5 		0.782 0.884
KLF11
M00241_2.00 		Homo sapiens
MCGCCCMC
GKGGGCGK		 PBM
Barrera et al.(2016)
KLF11_R402Q 		0.782 0.884
KLF11
M04555_2.00 		Homo sapiens
VMCMCRCCCHYNHCACGCCCMC
GKGGGCGTGDNRDGGGYGKGKB		 SELEX
Yin et al.(2017)
KLF11_eDBD_Methyl-HT-SELEX 		0.782 0.884
KLF10
M04489_2.00 		Homo sapiens
RMCACRCCCMYVHCACRCCCMC
GKGGGYGTGDBRKGGGYGTGKY		 SELEX
Yin et al.(2017)
KLF10_eDBD_HT-SELEX 		0.777 0.797
KLF10
M08246_2.00 		Homo sapiens
RCCMCRCCCH
DGGGYGKGGY		 ChIP-seq
Najafabadi et al.(2015b)
KLF10 		0.777 0.797
KLF10
M08317_2.00 		Homo sapiens
SMCMCRCCCMYNBSN
NSVNRKGGGYGKGKS		 ChIP-seq
Schmitges et al.(2016)
Q13118.MEME 		0.777 0.797
KLF10
M10228_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TIEG1_Q6 		0.777 0.797
KLF10
M04490_2.00 		Homo sapiens
RMCACRCCCMYGMCACRCCCHC
GDGGGYGTGKCRKGGGYGTGKY		 SELEX
Yin et al.(2017)
KLF10_eDBD_Methyl-HT-SELEX 		0.777 0.797
KLF13
M02903_2.00 		Homo sapiens
DDRMCACGCCCCYTTNDK
MHNAARGGGGCGTGKYHH		 SELEX
Jolma et al.(2013)
KLF13_1 		0.760 0.768
KLF13
M04537_2.00 		Homo sapiens
NRCCACRCCCMCN
NGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_HT-SELEX 		0.760 0.768
KLF13
M04539_2.00 		Homo sapiens
NRCCACRCCCMYN
NRKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_HT-SELEX 		0.760 0.768
KLF13
M04538_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_Methyl-HT-SELEX 		0.760 0.768
KLF13
M04540_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_Methyl-HT-SELEX 		0.760 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R015265 C2H2 ZF 394 418
Gfo_R015265 C2H2 ZF 424 448
Gfo_R015265 C2H2 ZF 454 476

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I
AGL65 Arabidopsis thaliana AT1G18750 D
AGL94 Arabidopsis thaliana AT1G69540 N
AGL30 Arabidopsis thaliana AT2G03060 I
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I
Bo9g072860 Brassica oleracea Bo9g072860 N
Bo7g080890 Brassica oleracea Bo7g080890 I
Bo6g109050 Brassica oleracea Bo6g109050 I
Bo8g104060 Brassica oleracea Bo8g104060 I
Bo8g068060 Brassica oleracea Bo8g068060 I
Bra024792 Brassica rapa Bra024792 I
Bra031049 Brassica rapa Bra031049 I
Bra017404 Brassica rapa Bra017404 I
Bra016544 Brassica rapa Bra016544 I
Bra004393 Brassica rapa Bra004393 I
PK03147.1 Cannabis sativa PK03147.1 I
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I
Carubv10020210m.g Capsella rubella Carubv10020210m.g I
Carubv10017440m.g Capsella rubella Carubv10017440m.g I
Carubv10009419m.g Capsella rubella Carubv10009419m.g I
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N
Ca_18082 Cicer arietinum Ca_18082 I
Ca_16376 Cicer arietinum Ca_16376 I
Cla010361 Citrullus lanatus Cla010361 I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
Cucsa.284960 Cucumis sativus Cucsa.284960 I
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I
GLYMA20G04500 Glycine max GLYMA20G04500 N
GLYMA07G35610 Glycine max GLYMA07G35610 N
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N
Lus10030450.g Linum usitatissimum Lus10030450.g I
Lus10037166.g Linum usitatissimum Lus10037166.g N
Lus10036761.g Linum usitatissimum Lus10036761.g N
Lus10026613.g Linum usitatissimum Lus10026613.g I
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
MDP0000146231 Malus domestica MDP0000146231 I
MDP0000146415 Malus domestica MDP0000146415 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000919323 Malus domestica MDP0000919323 I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I
Pavir.J04162 Panicum virgatum Pavir.J04162 I
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
Pm006479 Prunus mume Pm006479 I
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
29813.m001508 Ricinus communis 29813.m001508 I
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
Sb05g025970 Sorghum bicolor Sb05g025970 I
TCM_011687 Theobroma cacao TCM_011687 I