gene04949-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene04949-v1.0-hybrid T258305_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna04949.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.000
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.000
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.000
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.000
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.000
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.000
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.000
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.000
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.000
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Ca_08934 Cicer arietinum Ca_08934 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
Cla009163 Citrullus lanatus Cla009163 I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.000
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.771
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.812
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.771
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.000
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.000
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.000
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N 0.000
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.000
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.000
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.000
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.000
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.000
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.708
MDP0000925348 Malus domestica MDP0000925348 I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.750
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
Pm003257 Prunus mume Pm003257 I 0.000
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.000
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.729
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792