orange1.1g018825m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g018825m.g T258787_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g018780m MADS box 11 56
orange1.1g018825m MADS box 10 55

Links

Other MADS box family TFs
Other Citrus sinensis TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14820 Aegilops tauschii F775_14820 I
F775_13266 Aegilops tauschii F775_13266 I 0.761
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I
scaffold_301905.1 Arabidopsis lyrata scaffold_301905.1 I
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.787
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.826
ERF038 Arabidopsis thaliana AT2G35700 D
AT3G16280 Arabidopsis thaliana AT3G16280 D
ERF039 Arabidopsis thaliana AT4G16750 D
AGL94 Arabidopsis thaliana AT1G69540 N 0.783
AGL30 Arabidopsis thaliana AT2G03060 I 0.848
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I
Bostr.28625s0062 Boechera stricta Bostr.28625s0062 I
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.870
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.870
BRADI5G17620 Brachypodium distachyon BRADI5G17620 I
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D
Bo1g053270 Brassica oleracea Bo1g053270 I
Bo4g036220 Brassica oleracea Bo4g036220 I
Bo7g104770 Brassica oleracea Bo7g104770 I
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
Bo7g080890 Brassica oleracea Bo7g080890 I 0.826
Bo8g068060 Brassica oleracea Bo8g068060 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.729
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
Bra005314 Brassica rapa Bra005314 I
Bra012693 Brassica rapa Bra012693 I
Bra040092 Brassica rapa Bra040092 I
Bra004393 Brassica rapa Bra004393 I 0.783
Bra016544 Brassica rapa Bra016544 I 0.729
Bra017404 Brassica rapa Bra017404 I 0.870
Bra024792 Brassica rapa Bra024792 I 0.826
Bra025685 Brassica rapa Bra025685 I 0.745
Bra031049 Brassica rapa Bra031049 I 0.729
PK29340.1 Cannabis sativa PK29340.1 I
PK03147.1 Cannabis sativa PK03147.1 I 1.000
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I
Cagra.6624s0013 Capsella grandiflora Cagra.6624s0013 I
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.870
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.804
Carubv10005867m.g Capsella rubella Carubv10005867m.g I
Carubv10014506m.g Capsella rubella Carubv10014506m.g I
Carubv10024111m.g Capsella rubella Carubv10024111m.g I
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.870
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.804
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.891
Ca_01908 Cicer arietinum Ca_01908 I
Ca_05941 Cicer arietinum Ca_05941 I
Ca_18948 Cicer arietinum Ca_18948 I
Ca_28185 Cicer arietinum Ca_28185 I
Ca_16376 Cicer arietinum Ca_16376 I 0.935
Ca_18082 Cicer arietinum Ca_18082 I 0.913
Cla004187 Citrullus lanatus Cla004187 I
Cla017050 Citrullus lanatus Cla017050 I
Cla010361 Citrullus lanatus Cla010361 I 0.891
Cla018884 Citrullus lanatus Cla018884 I 0.739
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 1.000
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I
Cucsa.116550 Cucumis sativus Cucsa.116550 I
Cucsa.235510 Cucumis sativus Cucsa.235510 I
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.848
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I
Thhalv10022278m.g Eutrema salsugineum Thhalv10022278m.g I
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.826
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.708
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I
gene11882-v1.0-hybrid Fragaria vesca gene11882-v1.0-hybrid I
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I
GLYMA05G35741 Glycine max GLYMA05G35741 I
GLYMA08G03910 Glycine max GLYMA08G03910 I
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.804
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.870
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.761
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.848
Gorai.001G008100 Gossypium raimondii Gorai.001G008100 I
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I
Gorai.006G097000 Gossypium raimondii Gorai.006G097000 I
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I
Gorai.010G075300 Gossypium raimondii Gorai.010G075300 I
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.786
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.891
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.915
MLOC_17203 Hordeum vulgare MLOC_17203 I
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.717
Lus10011123.g Linum usitatissimum Lus10011123.g I
Lus10034949.g Linum usitatissimum Lus10034949.g I
Lus10043240.g Linum usitatissimum Lus10043240.g I
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.935
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.935
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.729
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.848
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.870
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I
chr4.CM0617.510.nd Lotus japonicus chr4.CM0617.510.nd I
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.745
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.891
MDP0000174352 Malus domestica MDP0000174352 I
MDP0000652413 Malus domestica MDP0000652413 I
MDP0000146231 Malus domestica MDP0000146231 I 0.957
MDP0000146415 Malus domestica MDP0000146415 I 0.956
MDP0000147667 Malus domestica MDP0000147667 I 0.935
MDP0000773068 Malus domestica MDP0000773068 I 0.956
MDP0000919323 Malus domestica MDP0000919323 I 0.956
cassava10514.m1 Manihot esculenta cassava10514.m1 I
cassava11373.m1 Manihot esculenta cassava11373.m1 I
cassava29917.valid.m1 Manihot esculenta cassava29917.valid.m1 I
cassava33300.m1 Manihot esculenta cassava33300.m1 I
cassava34828.m1 Manihot esculenta cassava34828.m1 I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.913
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.935
MTR_1g006660 Medicago truncatula MTR_1g006660 I
MTR_8g102800 Medicago truncatula MTR_8g102800 I
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.761
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.913
mgf019024m Mimulus guttatus mgf019024m I
mgf022802m Mimulus guttatus mgf022802m I
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I
OBART01G06440 Oryza barthii OBART01G06440 I
ORGLA01G0061000 Oryza glaberrima ORGLA01G0061000 I
OGLUM01G07430 Oryza glumaepatula OGLUM01G07430 I
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.717
BGIOSGA002184 Oryza indica BGIOSGA002184 I
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.717
OMERI01G06530 Oryza meridionalis OMERI01G06530 I
ONIVA01G08000 Oryza nivara ONIVA01G08000 I
OPUNC01G06210 Oryza punctata OPUNC01G06210 I
OPUNC06G16400 Oryza punctata OPUNC06G16400 I
ORUFI01G06970 Oryza rufipogon ORUFI01G06970 I
OS01G0200600 Oryza sativa OS01G0200600 I
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I
Pavir.Eb00249 Panicum virgatum Pavir.Eb00249 I
Pavir.Gb01129 Panicum virgatum Pavir.Gb01129 I
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.745
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.745
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.783
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
POPTR_0006s17670 Populus trichocarpa POPTR_0006s17670 I
POPTR_0018s09270 Populus trichocarpa POPTR_0018s09270 I
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 1.000
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.978
Pm023417 Prunus mume Pm023417 I
Pm027339 Prunus mume Pm027339 I
Pm006479 Prunus mume Pm006479 I 0.957
PRUPE_ppa010130mg Prunus persica PRUPE_ppa010130mg I
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.957
29912.m005463 Ricinus communis 29912.m005463 I
29813.m001508 Ricinus communis 29813.m001508 I 0.935
SapurV1A.0540s0020 Salix purpurea SapurV1A.0540s0020 I
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.978
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.978
SELMODRAFT_26594 Selaginella moellendorffii SELMODRAFT_26594 I
SELMODRAFT_26604 Selaginella moellendorffii SELMODRAFT_26604 I
Si002749m.g Setaria italica Si002749m.g I
Si007144m.g Setaria italica Si007144m.g I
Si019772m.g Setaria italica Si019772m.g I
Sb03g002630 Sorghum bicolor Sb03g002630 I
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
TCM_037811 Theobroma cacao TCM_037811 I
TCM_011687 Theobroma cacao TCM_011687 I 0.957
TCM_014051 Theobroma cacao TCM_014051 I 0.708
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I
GRMZM2G005301 Zea mays GRMZM2G005301 I