POPTR_0010s15090 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0010s15090 T278390_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.743 0.849
PK06182.1
M02349_2.00 		Cannabis sativa
WTACCTACCN
NGGTAGGTAW		 PBM
Weirauch et al.(2014)
pTH9581 		0.734 0.828
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.667 0.753
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.667 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s15090.1 Myb 14 61
POPTR_0010s15090.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0050s0720 Salix purpurea SapurV1A.0050s0720 I 0.874
cassava40469.m1 Manihot esculenta cassava40469.m1 I 0.869
Gorai.011G195100 Gossypium raimondii Gorai.011G195100 I 0.836
PK16958.1 Cannabis sativa PK16958.1 I 0.833
Ciclev10005376m.g Citrus clementina Ciclev10005376m.g I 0.831
orange1.1g041081m.g Citrus sinensis orange1.1g041081m.g I 0.831
TCM_021318 Theobroma cacao TCM_021318 I 0.830
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I 0.821
gene05167-v1.0-hybrid Fragaria vesca gene05167-v1.0-hybrid I 0.820
PRUPE_ppa007594mg Prunus persica PRUPE_ppa007594mg I 0.807
GLYMA02G01740 Glycine max GLYMA02G01740 I 0.806
GSMUA_Achr5G21250_001 Musa acuminata GSMUA_Achr5G21250_001 I 0.802
Pm008294 Prunus mume Pm008294 I 0.796
chr5.CM0239.580.nc Lotus japonicus chr5.CM0239.580.nc I 0.795
GSMUA_Achr8G10470_001 Musa acuminata GSMUA_Achr8G10470_001 I 0.795
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.793
Cucsa.069500 Cucumis sativus Cucsa.069500 I 0.792
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.790
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.790
MDP0000607330 Malus domestica MDP0000607330 I 0.787
MDP0000119725 Malus domestica MDP0000119725 I 0.787
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.787
Lus10016855.g Linum usitatissimum Lus10016855.g I 0.782
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I 0.781
Lus10002435.g Linum usitatissimum Lus10002435.g I 0.780
PDK_20s1388491g004 Phoenix dactylifera PDK_20s1388491g004 I 0.780
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I 0.778
GSMUA_AchrUn_randomG12700_001 Musa acuminata GSMUA_AchrUn_randomG12700_001 I 0.778
Lus10001458.g Linum usitatissimum Lus10001458.g I 0.777
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.776
orange1.1g014829m.g Citrus sinensis orange1.1g014829m.g I 0.776
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I 0.776
Cucsa.252700 Cucumis sativus Cucsa.252700 I 0.773
TCM_004777 Theobroma cacao TCM_004777 I 0.773
Cla009418 Citrullus lanatus Cla009418 I 0.771
mgf024278m Mimulus guttatus mgf024278m I 0.770
Cla017646 Citrullus lanatus Cla017646 I 0.769
Carubv10026694m.g Capsella rubella Carubv10026694m.g I 0.768
Cagra.6296s0007 Capsella grandiflora Cagra.6296s0007 I 0.768
Bra037419 Brassica rapa Bra037419 I 0.768
Bo7g092680 Brassica oleracea Bo7g092680 I 0.768
Cla022107 Citrullus lanatus Cla022107 I 0.767
Carubv10019345m.g Capsella rubella Carubv10019345m.g I 0.766
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I 0.766
TCM_021317 Theobroma cacao TCM_021317 I 0.763
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.761
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.761
GLYMA15G15400 Glycine max GLYMA15G15400 I 0.761
Bra036145 Brassica rapa Bra036145 I 0.759
Gorai.008G141000 Gossypium raimondii Gorai.008G141000 I 0.758
GLYMA10G01801 Glycine max GLYMA10G01801 I 0.756
Ca_03498 Cicer arietinum Ca_03498 I 0.756
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.755
mgf003233m Mimulus guttatus mgf003233m I 0.755
Si039538m.g Setaria italica Si039538m.g I 0.754
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.754
OPUNC03G13890 Oryza punctata OPUNC03G13890 I 0.754
LPERR03G12690 Leersia perrieri LPERR03G12690 I 0.754
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.754
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.754
GLYMA07G37142 Glycine max GLYMA07G37142 I 0.754
Gorai.007G124000 Gossypium raimondii Gorai.007G124000 I 0.753
MTR_7g109320 Medicago truncatula MTR_7g109320 I 0.749
PRUPE_ppa004560mg Prunus persica PRUPE_ppa004560mg I 0.748
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I 0.748
MLOC_57220 Hordeum vulgare MLOC_57220 I 0.748
TRIUR3_31689 Triticum urartu TRIUR3_31689 I 0.748
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I 0.748
F775_11235 Aegilops tauschii F775_11235 I 0.748
Sb01g037670 Sorghum bicolor Sb01g037670 I 0.747
GLYMA03G37640 Glycine max GLYMA03G37640 I 0.746
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I 0.745
GRMZM2G084799 Zea mays GRMZM2G084799 I 0.745
GRMZM2G057027 Zea mays GRMZM2G057027 I 0.745
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.745
MYB111 Arabidopsis thaliana AT5G49330 D 0.743
MYB111 Arabidopsis lyrata scaffold_801313.1 I 0.743
Solyc06g009710.2 Solanum lycopersicum Solyc06g009710.2 I 0.742
Si002107m.g Setaria italica Si002107m.g I 0.740
Sb03g012550 Sorghum bicolor Sb03g012550 I 0.740
evm.TU.supercontig_18.11 Carica papaya evm.TU.supercontig_18.11 I 0.738
GLYMA19G40250 Glycine max GLYMA19G40250 I 0.736
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I 0.736
F775_18434 Aegilops tauschii F775_18434 I 0.735
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.734
PGSC0003DMG400007304 Solanum tuberosum PGSC0003DMG400007304 I 0.734
PK06182.1 Cannabis sativa PK06182.1 D 0.734
PGSC0003DMG400004371 Solanum tuberosum PGSC0003DMG400004371 I 0.733
Solyc12g049350.1 Solanum lycopersicum Solyc12g049350.1 I 0.733
Bostr.13158s0261 Boechera stricta Bostr.13158s0261 I 0.732
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.732
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I 0.731
MYB12 Arabidopsis thaliana AT2G47460 I 0.731
Bostr.25993s0011 Boechera stricta Bostr.25993s0011 I 0.731
MYB12 Arabidopsis lyrata fgenesh2_kg.4__2983__AT2G47460.1 I 0.731
Bra000453 Brassica rapa Bra000453 I 0.731
VIT_05s0077g01360 Vitis vinifera VIT_05s0077g01360 I 0.729
GRMZM2G022686 Zea mays GRMZM2G022686 I 0.728
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I 0.728
Bo3g039690 Brassica oleracea Bo3g039690 I 0.722
BGIOSGA010900 Oryza indica BGIOSGA010900 I 0.720
ONIVA03G15280 Oryza nivara ONIVA03G15280 I 0.720
ORUFI03G15030 Oryza rufipogon ORUFI03G15030 I 0.720
BRADI2G11676 Brachypodium distachyon BRADI2G11676 I 0.720
OMERI03G13130 Oryza meridionalis OMERI03G13130 I 0.720
OBART03G14380 Oryza barthii OBART03G14380 I 0.720
Eucgr.A00200 Eucalyptus grandis Eucgr.A00200 I 0.718
mgf012733m Mimulus guttatus mgf012733m I 0.717
BRADI1G64687 Brachypodium distachyon BRADI1G64687 I 0.716
Solyc01g079620.2 Solanum lycopersicum Solyc01g079620.2 I 0.712
PGSC0003DMG400009033 Solanum tuberosum PGSC0003DMG400009033 I 0.712
TCM_037555 Theobroma cacao TCM_037555 I 0.712
OB03G24320 Oryza brachyantha OB03G24320 I 0.707
orange1.1g046093m.g Citrus sinensis orange1.1g046093m.g I 0.703
Ciclev10023756m.g Citrus clementina Ciclev10023756m.g I 0.703
Traes_1DS_711044AD5 Triticum aestivum Traes_1DS_711044AD5 I 0.703
Lus10036336.g Linum usitatissimum Lus10036336.g I 0.701
GRMZM2G160838 Zea mays GRMZM2G160838 I 0.701
evm.TU.supercontig_9.95 Carica papaya evm.TU.supercontig_9.95 I 0.700
Eucgr.H01058 Eucalyptus grandis Eucgr.H01058 I 0.699
Bo4g004500 Brassica oleracea Bo4g004500 I 0.698
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.697
Pm020104 Prunus mume Pm020104 I 0.693
TRIUR3_05136 Triticum urartu TRIUR3_05136 I 0.692
MYB11 Arabidopsis thaliana AT3G62610 I 0.692
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I 0.689
gene15392-v1.0-hybrid Fragaria vesca gene15392-v1.0-hybrid I 0.689
SELMODRAFT_450007 Selaginella moellendorffii SELMODRAFT_450007 I 0.688
SELMODRAFT_120788 Selaginella moellendorffii SELMODRAFT_120788 I 0.688
Pavir.J00444 Panicum virgatum Pavir.J00444 I 0.687
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I 0.687
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.686
Carubv10024801m.g Capsella rubella Carubv10024801m.g I 0.686
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I 0.683
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I 0.683
F775_21522 Aegilops tauschii F775_21522 I 0.680
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.678
Lus10036453.g Linum usitatissimum Lus10036453.g I 0.676
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I 0.675
30068.m002544 Ricinus communis 30068.m002544 I 0.675
OS01G0305900 Oryza sativa OS01G0305900 I 0.672
ORGLA03G0138900 Oryza glaberrima ORGLA03G0138900 I 0.672
OGLUM03G14490 Oryza glumaepatula OGLUM03G14490 I 0.672
TRIUR3_09734 Triticum urartu TRIUR3_09734 I 0.672
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I 0.672
BGIOSGA003345 Oryza indica BGIOSGA003345 I 0.672
ORUFI01G13920 Oryza rufipogon ORUFI01G13920 I 0.672
TCM_000174 Theobroma cacao TCM_000174 I 0.672
POPTR_0004s14510 Populus trichocarpa POPTR_0004s14510 I 0.671
gene09406-v1.0-hybrid Fragaria vesca gene09406-v1.0-hybrid I 0.671
OB01G22640 Oryza brachyantha OB01G22640 I 0.671
F775_42516 Aegilops tauschii F775_42516 I 0.670
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.670
HOS10 Arabidopsis lyrata fgenesh2_kg.1__3635__AT1G35515.1 I 0.670
Bra010736 Brassica rapa Bra010736 I 0.670
cassava24925.valid.m1 Manihot esculenta cassava24925.valid.m1 I 0.670
MDP0000140609 Malus domestica MDP0000140609 I 0.668
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I 0.668
Pavir.J35999 Panicum virgatum Pavir.J35999 I 0.668
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I 0.668
TCM_010778 Theobroma cacao TCM_010778 I 0.668
Pm005570 Prunus mume Pm005570 I 0.668
MDP0000031172 Malus domestica MDP0000031172 I 0.668
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I 0.668
MYB4 Arabidopsis thaliana AT4G38620 D 0.667
Bra033572 Brassica rapa Bra033572 I 0.667
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.667
Bra000680 Brassica rapa Bra000680 I 0.667
Bo3g044210 Brassica oleracea Bo3g044210 I 0.667
Bo7g119670 Brassica oleracea Bo7g119670 I 0.667
ATMYB4 Arabidopsis lyrata fgenesh2_kg.7__59__AT4G38620.1 I 0.667
Thhalv10025886m.g Eutrema salsugineum Thhalv10025886m.g I 0.667
Eucgr.I01406 Eucalyptus grandis Eucgr.I01406 I 0.667
Pm027048 Prunus mume Pm027048 I 0.667
Solyc10g055410.1 Solanum lycopersicum Solyc10g055410.1 I 0.667
Cucsa.234310 Cucumis sativus Cucsa.234310 I 0.667
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I 0.667
Bostr.25542s0045 Boechera stricta Bostr.25542s0045 I 0.667
GSMUA_AchrUn_randomG28780_001 Musa acuminata GSMUA_AchrUn_randomG28780_001 I 0.667
Cla020592 Citrullus lanatus Cla020592 I 0.667
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.666
Cagra.9781s0007 Capsella grandiflora Cagra.9781s0007 I 0.666
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.666
SapurV1A.1127s0040 Salix purpurea SapurV1A.1127s0040 I 0.665
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I 0.665
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I 0.665
SapurV1A.0591s0010 Salix purpurea SapurV1A.0591s0010 I 0.665
MYB8 Arabidopsis thaliana AT1G35515 I 0.665
Pavir.J30990 Panicum virgatum Pavir.J30990 I 0.665
Pm025102 Prunus mume Pm025102 I 0.665
TCM_037376 Theobroma cacao TCM_037376 I 0.665
MDP0000210851 Malus domestica MDP0000210851 I 0.665
OB03G30160 Oryza brachyantha OB03G30160 I 0.665
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.665
Gorai.007G192900 Gossypium raimondii Gorai.007G192900 I 0.665
Aquca_073_00013 Aquilegia coerulea Aquca_073_00013 I 0.664
Gorai.009G263200 Gossypium raimondii Gorai.009G263200 I 0.664
Lus10010273.g Linum usitatissimum Lus10010273.g I 0.664
Gorai.001G020400 Gossypium raimondii Gorai.001G020400 I 0.663
OB02G39890 Oryza brachyantha OB02G39890 I 0.663
Carubv10012451m.g Capsella rubella Carubv10012451m.g I 0.663
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.663
PRUPE_ppa011954mg Prunus persica PRUPE_ppa011954mg I 0.662
BGIOSGA026527 Oryza indica BGIOSGA026527 I 0.662
GSMUA_Achr8G33900_001 Musa acuminata GSMUA_Achr8G33900_001 I 0.662
BGIOSGA026525 Oryza indica BGIOSGA026525 I 0.662
Gorai.005G254000 Gossypium raimondii Gorai.005G254000 I 0.662
GSMUA_Achr1G26520_001 Musa acuminata GSMUA_Achr1G26520_001 I 0.662
OB08G29560 Oryza brachyantha OB08G29560 I 0.662
ORUFI08G25300 Oryza rufipogon ORUFI08G25300 I 0.662
GRMZM2G041415 Zea mays GRMZM2G041415 I 0.662
ORGLA08G0216900 Oryza glaberrima ORGLA08G0216900 I 0.662
TRIUR3_11890 Triticum urartu TRIUR3_11890 I 0.661
BRADI4G36460 Brachypodium distachyon BRADI4G36460 I 0.661
Traes_5BL_AED68C680 Triticum aestivum Traes_5BL_AED68C680 I 0.661
Traes_5AL_56F30392D Triticum aestivum Traes_5AL_56F30392D I 0.661
Traes_4DL_26A958CDD Triticum aestivum Traes_4DL_26A958CDD I 0.661
F775_31191 Aegilops tauschii F775_31191 I 0.661
Traes_5DL_1868E2A6C Triticum aestivum Traes_5DL_1868E2A6C I 0.661
Bo3g149450 Brassica oleracea Bo3g149450 I 0.661
F775_19148 Aegilops tauschii F775_19148 I 0.661