Carubv10024801m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10024801m.g T286433_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06182.1
M02349_2.00 		Cannabis sativa
WTACCTACCN
NGGTAGGTAW		 PBM
Weirauch et al.(2014)
pTH9581 		0.761 0.849
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.728 0.839
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024801m Myb 14 61
Carubv10024801m Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25993s0011 Boechera stricta Bostr.25993s0011 I 0.864
MYB12 Arabidopsis lyrata fgenesh2_kg.4__2983__AT2G47460.1 I 0.860
MYB12 Arabidopsis thaliana AT2G47460 I 0.860
Bo3g039690 Brassica oleracea Bo3g039690 I 0.850
Bra000453 Brassica rapa Bra000453 I 0.847
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I 0.841
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I 0.840
Bo4g004500 Brassica oleracea Bo4g004500 I 0.832
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I 0.832
Bostr.13158s0261 Boechera stricta Bostr.13158s0261 I 0.828
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I 0.798
Carubv10019345m.g Capsella rubella Carubv10019345m.g I 0.798
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I 0.787
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I 0.787
MLOC_57220 Hordeum vulgare MLOC_57220 I 0.787
TRIUR3_31689 Triticum urartu TRIUR3_31689 I 0.787
F775_11235 Aegilops tauschii F775_11235 I 0.787
Solyc01g079620.2 Solanum lycopersicum Solyc01g079620.2 I 0.774
PGSC0003DMG400009033 Solanum tuberosum PGSC0003DMG400009033 I 0.774
BRADI1G64687 Brachypodium distachyon BRADI1G64687 I 0.771
Sb01g037670 Sorghum bicolor Sb01g037670 I 0.769
TCM_004777 Theobroma cacao TCM_004777 I 0.765
PK06182.1 Cannabis sativa PK06182.1 D 0.761
Si039538m.g Setaria italica Si039538m.g I 0.759
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.759
Cucsa.069500 Cucumis sativus Cucsa.069500 I 0.757
Cla009418 Citrullus lanatus Cla009418 I 0.757
evm.TU.supercontig_9.95 Carica papaya evm.TU.supercontig_9.95 I 0.753
GSMUA_Achr5G21250_001 Musa acuminata GSMUA_Achr5G21250_001 I 0.751
GRMZM2G022686 Zea mays GRMZM2G022686 I 0.751
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I 0.749
Gorai.007G124000 Gossypium raimondii Gorai.007G124000 I 0.748
BRADI2G11676 Brachypodium distachyon BRADI2G11676 I 0.747
GRMZM2G057027 Zea mays GRMZM2G057027 I 0.744
GRMZM2G084799 Zea mays GRMZM2G084799 I 0.744
GSMUA_Achr8G10470_001 Musa acuminata GSMUA_Achr8G10470_001 I 0.744
GSMUA_AchrUn_randomG12700_001 Musa acuminata GSMUA_AchrUn_randomG12700_001 I 0.744
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.743
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.743
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.739
GLYMA07G37142 Glycine max GLYMA07G37142 I 0.737
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.737
Si002107m.g Setaria italica Si002107m.g I 0.736
Sb03g012550 Sorghum bicolor Sb03g012550 I 0.736
LPERR03G12690 Leersia perrieri LPERR03G12690 I 0.735
OPUNC03G13890 Oryza punctata OPUNC03G13890 I 0.735
Traes_1DS_711044AD5 Triticum aestivum Traes_1DS_711044AD5 I 0.734
PRUPE_ppa007594mg Prunus persica PRUPE_ppa007594mg I 0.733
chr5.CM0239.580.nc Lotus japonicus chr5.CM0239.580.nc I 0.732
Gorai.008G141000 Gossypium raimondii Gorai.008G141000 I 0.730
MYB11 Arabidopsis thaliana AT3G62610 I 0.729
Bra037419 Brassica rapa Bra037419 I 0.728
MYB111 Arabidopsis lyrata scaffold_801313.1 I 0.728
Cagra.6296s0007 Capsella grandiflora Cagra.6296s0007 I 0.728
GLYMA15G15400 Glycine max GLYMA15G15400 I 0.728
Carubv10026694m.g Capsella rubella Carubv10026694m.g I 0.728
MYB111 Arabidopsis thaliana AT5G49330 D 0.728
Cucsa.252700 Cucumis sativus Cucsa.252700 I 0.728
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.728
gene05167-v1.0-hybrid Fragaria vesca gene05167-v1.0-hybrid I 0.728
Bo7g092680 Brassica oleracea Bo7g092680 I 0.728
Eucgr.A00200 Eucalyptus grandis Eucgr.A00200 I 0.727
Solyc06g009710.2 Solanum lycopersicum Solyc06g009710.2 I 0.727
cassava40469.m1 Manihot esculenta cassava40469.m1 I 0.726
Cla022107 Citrullus lanatus Cla022107 I 0.725
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I 0.724
Pm008294 Prunus mume Pm008294 I 0.722
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I 0.721
TRIUR3_05136 Triticum urartu TRIUR3_05136 I 0.719
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.719
Lus10036336.g Linum usitatissimum Lus10036336.g I 0.719
PGSC0003DMG400007304 Solanum tuberosum PGSC0003DMG400007304 I 0.718
PRUPE_ppa004560mg Prunus persica PRUPE_ppa004560mg I 0.718
BGIOSGA010900 Oryza indica BGIOSGA010900 I 0.717
ONIVA03G15280 Oryza nivara ONIVA03G15280 I 0.717
orange1.1g041081m.g Citrus sinensis orange1.1g041081m.g I 0.717
OBART03G14380 Oryza barthii OBART03G14380 I 0.717
Ciclev10005376m.g Citrus clementina Ciclev10005376m.g I 0.717
OMERI03G13130 Oryza meridionalis OMERI03G13130 I 0.717
GLYMA02G01740 Glycine max GLYMA02G01740 I 0.717
ORUFI03G15030 Oryza rufipogon ORUFI03G15030 I 0.717
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.714
orange1.1g014829m.g Citrus sinensis orange1.1g014829m.g I 0.714
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I 0.711
mgf003233m Mimulus guttatus mgf003233m I 0.711
PK16958.1 Cannabis sativa PK16958.1 I 0.711
MDP0000607330 Malus domestica MDP0000607330 I 0.709
MDP0000119725 Malus domestica MDP0000119725 I 0.709
TCM_021318 Theobroma cacao TCM_021318 I 0.708
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.706
evm.TU.supercontig_18.11 Carica papaya evm.TU.supercontig_18.11 I 0.705
Aquca_076_00099 Aquilegia coerulea Aquca_076_00099 I 0.703
TCM_037555 Theobroma cacao TCM_037555 I 0.703
TCM_021317 Theobroma cacao TCM_021317 I 0.703
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.703
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.703
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.699
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.697
mgf024278m Mimulus guttatus mgf024278m I 0.697
Ca_03498 Cicer arietinum Ca_03498 I 0.697
Gorai.011G195100 Gossypium raimondii Gorai.011G195100 I 0.696
Bra036145 Brassica rapa Bra036145 I 0.695
Cla017646 Citrullus lanatus Cla017646 I 0.694
LjT02E24.60.nc Lotus japonicus LjT02E24.60.nc I 0.694
LjT02E24.110.nc Lotus japonicus LjT02E24.110.nc I 0.694
Lus10002435.g Linum usitatissimum Lus10002435.g I 0.693
PGSC0003DMG400004371 Solanum tuberosum PGSC0003DMG400004371 I 0.693
GLYMA03G37640 Glycine max GLYMA03G37640 I 0.692
Bo8g095790 Brassica oleracea Bo8g095790 I 0.690
Bra007588 Brassica rapa Bra007588 I 0.690
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I 0.690
Lus10027459.g Linum usitatissimum Lus10027459.g I 0.689
GRMZM2G052606 Zea mays GRMZM2G052606 I 0.689
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I 0.689
Sb08g016620 Sorghum bicolor Sb08g016620 I 0.689
cassava24925.valid.m1 Manihot esculenta cassava24925.valid.m1 I 0.687
OB03G24320 Oryza brachyantha OB03G24320 I 0.687
Lus10039214.g Linum usitatissimum Lus10039214.g I 0.687
MTR_7g109320 Medicago truncatula MTR_7g109320 I 0.686
POPTR_0010s15090 Populus trichocarpa POPTR_0010s15090 I 0.686
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.685
F775_21522 Aegilops tauschii F775_21522 I 0.685
Solyc12g049350.1 Solanum lycopersicum Solyc12g049350.1 I 0.684
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I 0.683
OS01G0305900 Oryza sativa OS01G0305900 I 0.683
BGIOSGA003345 Oryza indica BGIOSGA003345 I 0.683
ORUFI01G13920 Oryza rufipogon ORUFI01G13920 I 0.683
OB01G22640 Oryza brachyantha OB01G22640 I 0.682
Si024786m.g Setaria italica Si024786m.g I 0.680
BGIOSGA036092 Oryza indica BGIOSGA036092 I 0.680
F775_06561 Aegilops tauschii F775_06561 I 0.680
BRADI4G06317 Brachypodium distachyon BRADI4G06317 I 0.680
ORGLA12G0120900 Oryza glaberrima ORGLA12G0120900 I 0.680
Traes_5DS_AACA2EBA3 Triticum aestivum Traes_5DS_AACA2EBA3 I 0.680
ORUFI12G15040 Oryza rufipogon ORUFI12G15040 I 0.680
Traes_5BS_2CB91C54A Triticum aestivum Traes_5BS_2CB91C54A I 0.680
MLOC_66577 Hordeum vulgare MLOC_66577 I 0.680
OMERI12G09660 Oryza meridionalis OMERI12G09660 I 0.680
TRIUR3_33254 Triticum urartu TRIUR3_33254 I 0.680
OBART12G13720 Oryza barthii OBART12G13720 I 0.680
ONIVA05G29400 Oryza nivara ONIVA05G29400 I 0.680
OPUNC12G12380 Oryza punctata OPUNC12G12380 I 0.680
OGLUM12G15400 Oryza glumaepatula OGLUM12G15400 I 0.680
F775_18434 Aegilops tauschii F775_18434 I 0.679
mgf012733m Mimulus guttatus mgf012733m I 0.679
PDK_20s1388491g004 Phoenix dactylifera PDK_20s1388491g004 I 0.677
SapurV1A.0050s0720 Salix purpurea SapurV1A.0050s0720 I 0.675
Lus10010273.g Linum usitatissimum Lus10010273.g I 0.673
Thhalv10006126m.g Eutrema salsugineum Thhalv10006126m.g I 0.673
GLYMA10G01801 Glycine max GLYMA10G01801 I 0.673
Lus10033438.g Linum usitatissimum Lus10033438.g I 0.672
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.672
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.672
MTR_7g076740 Medicago truncatula MTR_7g076740 I 0.670
Eucgr.H01058 Eucalyptus grandis Eucgr.H01058 I 0.670
ORGLA03G0138900 Oryza glaberrima ORGLA03G0138900 I 0.670
OGLUM03G14490 Oryza glumaepatula OGLUM03G14490 I 0.670
Lus10016855.g Linum usitatissimum Lus10016855.g I 0.670
Gorai.004G037300 Gossypium raimondii Gorai.004G037300 I 0.669
Aquca_014_00829 Aquilegia coerulea Aquca_014_00829 I 0.668
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.668
LjT02E24.130.nc Lotus japonicus LjT02E24.130.nc I 0.668
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.667
Lus10001458.g Linum usitatissimum Lus10001458.g I 0.667
Cagra.0551s0003 Capsella grandiflora Cagra.0551s0003 I 0.667
AtMYB17 Vitis vinifera VIT_15s0046g03190 I 0.666
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.666
TCM_015685 Theobroma cacao TCM_015685 I 0.665
PK16315.1 Cannabis sativa PK16315.1 I 0.665
Bra014446 Brassica rapa Bra014446 I 0.664
Bra003443 Brassica rapa Bra003443 I 0.664
Pm020104 Prunus mume Pm020104 I 0.663
Lus10000470.g Linum usitatissimum Lus10000470.g I 0.663
GSMUA_Achr11G04090_001 Musa acuminata GSMUA_Achr11G04090_001 I 0.662
Eucgr.D02271 Eucalyptus grandis Eucgr.D02271 I 0.661
Ciclev10023756m.g Citrus clementina Ciclev10023756m.g I 0.661
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I 0.661
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I 0.661
TCM_011660 Theobroma cacao TCM_011660 I 0.661
Eucgr.C03152 Eucalyptus grandis Eucgr.C03152 N 0.661
Eucgr.C03153 Eucalyptus grandis Eucgr.C03153 N 0.661
MDP0000210851 Malus domestica MDP0000210851 I 0.661
Lus10027369.g Linum usitatissimum Lus10027369.g I 0.661
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.661
orange1.1g046093m.g Citrus sinensis orange1.1g046093m.g I 0.661