MTR_1g101600 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_1g101600 T002803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.735 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.735 0.900
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.724 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.724 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.724 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.724 0.900
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.723 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.723 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.723 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES62573 AP2 39 90

Links

Other AP2 family TFs
Other Medicago truncatula TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I 0.719
30190.m011120 Ricinus communis 30190.m011120 I 0.692
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.677
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.000
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.000
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.000
DREB1C Arabidopsis thaliana AT4G25470 D 0.723
DREB1A Arabidopsis thaliana AT4G25480 D 0.724
DREB1D Arabidopsis thaliana AT5G51990 D 0.735
DREB1G Oryza indica BGIOSGA008804 I 0.000
Bo9g104770 Brassica oleracea Bo9g104770 I 0.735
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.735
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.723
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.749
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.723
Bra028290 Brassica rapa Bra028290 I 0.735
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.000
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.735
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.752
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.723
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.723
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.735
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.738
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.745
Cla002362 Citrullus lanatus Cla002362 I 0.750
Cla006315 Citrullus lanatus Cla006315 I 0.744
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.728
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.747
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.731
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.718
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.731
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.760
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.736
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.745
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.000
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.000
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.693
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.000
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.000
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.000
mgf026642m Mimulus guttatus mgf026642m I 0.753
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.000
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.694
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.702
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.717
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.713
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.713
OBART02G27760 Oryza barthii OBART02G27760 I 0.000
OBART04G22220 Oryza barthii OBART04G22220 I 0.000
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.000
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.000
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.000
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.000
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.000
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.000
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.000
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.000
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.000
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.000
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.000
DREB1G Oryza sativa OS02G0677300 D 0.000
DREB1E Oryza sativa OS04G0572400 D 0.000
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.000
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.000
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.000
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.718
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.715
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.738
PK23332.1 Cannabis sativa PK23332.1 I 0.760
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.723
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.745
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.739
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.747
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.724
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.000
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.000
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.735
Si011005m.g Setaria italica Si011005m.g I 0.000
Si018262m.g Setaria italica Si018262m.g I 0.000
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.781
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.766
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.776
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.735
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.749