Bo4g019840 (Brassica oleracea)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bo4g019840 T319925_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.816 0.816
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.796 0.796
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g019840.1 RWP-RK 531 579

Links

Other RWP-RK family TFs
Other Brassica oleracea TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I 0.000
30190.m011120 Ricinus communis 30190.m011120 I 0.000
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.000
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.000
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.000
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.000
DREB1C Arabidopsis thaliana AT4G25470 D 0.000
DREB1A Arabidopsis thaliana AT4G25480 D 0.000
DREB1D Arabidopsis thaliana AT5G51990 D 0.000
DREB1G Oryza indica BGIOSGA008804 I 0.000
DREB1E Oryza indica BGIOSGA016950 I 0.000
Bo9g104770 Brassica oleracea Bo9g104770 I 0.000
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.000
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.000
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.000
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.000
Bra028290 Brassica rapa Bra028290 I 0.000
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.000
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.000
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.000
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.000
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.000
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.000
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.000
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.000
Cla002362 Citrullus lanatus Cla002362 I 0.000
Cla006315 Citrullus lanatus Cla006315 I 0.000
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.000
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.000
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.000
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.000
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.000
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.000
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.000
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.000
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.000
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.000
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.000
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.000
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.000
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.000
mgf026642m Mimulus guttatus mgf026642m I 0.000
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.000
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.000
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.000
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.000
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.000
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.000
OBART02G27760 Oryza barthii OBART02G27760 I 0.000
OBART04G22220 Oryza barthii OBART04G22220 I 0.000
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.000
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.000
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.000
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.000
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.000
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.000
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.000
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.000
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.000
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.000
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.000
DREB1G Oryza sativa OS02G0677300 D 0.000
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.000
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.000
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.000
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.000
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.000
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.000
PK23332.1 Cannabis sativa PK23332.1 I 0.000
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.000
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.000
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.000
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.000
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.000
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.000
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.000
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.000
Si011005m.g Setaria italica Si011005m.g I 0.000
Si018262m.g Setaria italica Si018262m.g I 0.000
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.000
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.000
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.000
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.000
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.000