chr2.LjB17A04.40.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr2.LjB17A04.40.nc T345116_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.886 0.409
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.873 0.468
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.870 0.403
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjB17A04.40.nc TCP 104 261

Links

Other TCP family TFs
Other Lotus japonicus TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.905
30167.m000856 Ricinus communis 30167.m000856 I 0.910
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.865
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.855
TCP1 Arabidopsis thaliana AT1G67260 D 0.870
BRC2 Arabidopsis thaliana AT1G68800 I 0.884
Bo2g055640 Brassica oleracea Bo2g055640 I 0.864
Bo2g061250 Brassica oleracea Bo2g061250 I 0.879
Bo6g099040 Brassica oleracea Bo6g099040 I 0.876
Bo6g103670 Brassica oleracea Bo6g103670 I 0.880
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.868
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.829
Bra004097 Brassica rapa Bra004097 I 0.883
Bra004212 Brassica rapa Bra004212 I 0.896
Bra034010 Brassica rapa Bra034010 I 0.874
Bra038350 Brassica rapa Bra038350 I 0.879
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.854
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.872
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.872
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.849
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.904
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.898
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.823
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.831
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.950
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.916
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.831
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.893
Cla002355 Citrullus lanatus Cla002355 I 0.888
Cla007227 Citrullus lanatus Cla007227 I 0.904
Cla016709 Citrullus lanatus Cla016709 I 0.903
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.924
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.891
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.878
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.857
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.838
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.903
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.895
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.900
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.868
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.883
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.872
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.943
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.943
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.956
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.944
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.958
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.931
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.886
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.881
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.823
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.845
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.824
MDP0000173048 Malus domestica MDP0000173048 I 0.900
MDP0000272980 Malus domestica MDP0000272980 I 0.887
mgf019480m Mimulus guttatus mgf019480m I 0.867
mgf022233m Mimulus guttatus mgf022233m I 0.846
mgf026636m Mimulus guttatus mgf026636m I 0.857
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.827
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.917
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.940
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.944
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.831
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.893
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.894
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.848
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.891
PK12240.1 Cannabis sativa PK12240.1 D 0.886
PK19717.1 Cannabis sativa PK19717.1 D 0.873
Pm015499 Prunus mume Pm015499 I 0.876
Pm029002 Prunus mume Pm029002 I 0.890
Pm030202 Prunus mume Pm030202 I 0.831
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.902
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.893
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.888
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.831
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.890
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.877
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.893
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.891
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.858
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.895
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.898
TCM_011874 Theobroma cacao TCM_011874 I 0.880
TCM_019518 Theobroma cacao TCM_019518 I 0.891
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.872
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.876
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.870